Aniseed - Gene card

EST 'FK082993.1' >
Clone 'cien161870' >
Gene 'KH2012:KH.L142.3'

Gene Card

Best human hits

SRP72

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011248

Gene Model ID

KH2012:KH.L142.3

Location

KhL142:15790..23556

Transcript Models and Sequences

KH2012:KH.L142.3.v1.A.ND3-1
KH2012:KH.L142.3.v1.A.nonSL5-1
KH2012:KH.L142.3.v1.A.SL1-1
KH2012:KH.L142.3.v1.A.SL2-1
KH2012:KH.L142.3.v1.A.SL4-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000002417
NCBI Reference Sequence	XM_002130377.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

citb069b05

Plate: R1CiGC46m23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
TPR_repeat	ProSiteProfiles	Tetratricopeptide repeat
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily
TPR-contain_dom	ProSiteProfiles	Tetratricopeptide repeat-containing domain
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
SRP72	PANTHER	Signal recognition particle, SRP72 subunit
TPR_repeat	SMART	Tetratricopeptide repeat
SRP72	PIRSF	Signal recognition particle, SRP72 subunit
TPR_repeat	Pfam	Tetratricopeptide repeat
SRP_TPR-like	Pfam	Putative TPR-like repeat
Signal_recog_part_SRP72_RNA-bd	Pfam	Signal recognition particle, SRP72 subunit, RNA-binding

GOSlim

11 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transmembrane transport	Orthology	biological process

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
signal recognition particle binding	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
signal recognition particle, endoplasmic reticulum targeting	Hs	cellular component
cytosol	Hs	cellular component
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane, translocation	Hs	biological process
7S RNA binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
TPR domain binding	Hs	molecular function
response to drug	Hs	biological process
ribosome binding	Hs	molecular function
signal recognition particle	Hs	cellular component

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	457	1.12e-152
signal recognition particle binding	Hs	molecular function	457	1.12e-152
protein binding	Hs	molecular function	457	1.12e-152
intracellular	Hs	cellular component	457	1.12e-152
cytoplasm	Hs	cellular component	457	1.12e-152
endoplasmic reticulum	Hs	cellular component	457	1.12e-152
signal recognition particle, endoplasmic reticulum targeting	Hs	cellular component	457	1.12e-152
cytosol	Hs	cellular component	457	1.12e-152
7S RNA binding	Hs	molecular function	457	1.12e-152
intracellular ribonucleoprotein complex	Hs	cellular component	457	1.12e-152
TPR domain binding	Hs	molecular function	457	1.12e-152
ribosome binding	Hs	molecular function	457	1.12e-152
signal recognition particle	Hs	cellular component	457	1.12e-152

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
protein binding	Gene3D	molecular function	1.1E-50
SRP-dependent cotranslational protein targeting to membrane	PANTHER	biological process	1.3E-207
7S RNA binding	Pfam	molecular function	7.2E-13
signal recognition particle	Pfam	cellular component	7.2E-13