Aniseed - Gene card

Gene 'KH2012:KH.L14.2'

Gene Card

Best human hits

SLC28A1; SLC28A2; SLC28A3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011149

Gene Model ID

KH2012:KH.L14.2

Location

KhL14:1459..12854

Transcript Models and Sequences

KH2012:KH.L14.2.v1.A.nonSL10-1
KH2012:KH.L14.2.v1.A.nonSL2-1
KH2012:KH.L14.2.v1.A.nonSL4-1
KH2012:KH.L14.2.v1.A.nonSL5-1
KH2012:KH.L14.2.v1.A.nonSL6-1
KH2012:KH.L14.2.v1.A.nonSL7-1
KH2012:KH.L14.2.v1.A.nonSL8-1
KH2012:KH.L14.2.v1.A.nonSL9-1
KH2012:KH.L14.2.v1.R.ND1-1
KH2012:KH.L14.2.v2.A.SL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004485
NCBI Reference Sequence	XM_002119857.3

Collections

Gateway full ORF

5 results

Gene collection 1 (N. Satoh)

3 results

cigd041j15

Plate: R1CiGC41j07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
C_nuclsd_transpt	PANTHER	Concentrative nucleoside transporter
CNT_N_dom	Pfam	Concentrative nucleoside transporter N-terminal domain
CNT3	PANTHER	Concentrative nucleoside transporter CNT3
C_nuclsd_transpt_met_bac	TIGRFAM	Concentrative nucleoside transporter, metazoan/bacterial
CNT_C_dom	Pfam	Concentrative nucleoside transporter C-terminal domain

GOSlim

9 results

GO Term	Annotation Origin	Type
endoplasmic reticulum	Blast	cellular component
endoplasmic reticulum membrane	Blast	cellular component
plasma membrane	Blast	cellular component
integral component of plasma membrane	Blast	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
organic substance transport	Blast	biological process
transmembrane transport	Blast	biological process
sodium ion transport	Blast	biological process

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleoside transmembrane transporter activity	Hs	molecular function	481	6.74e-163
nucleoside:sodium symporter activity	Hs	molecular function	481	6.74e-163
endoplasmic reticulum	Hs	cellular component	481	6.74e-163
endoplasmic reticulum membrane	Hs	cellular component	481	6.74e-163
plasma membrane	Hs	cellular component	481	6.74e-163
integral component of plasma membrane	Hs	cellular component	481	6.74e-163
purine nucleoside transmembrane transporter activity	Hs	molecular function	417	1.94e-138
pyrimidine- and adenine-specific:sodium symporter activity	Hs	molecular function	481	6.74e-163
purine-specific nucleoside:sodium symporter activity	Hs	molecular function	481	6.74e-163
membrane	Hs	cellular component	481	6.74e-163
integral component of membrane	Hs	cellular component	481	6.74e-163

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleoside transmembrane transporter activity	PANTHER	molecular function	5.6E-184
integral component of plasma membrane	PANTHER	cellular component	5.6E-184
membrane	PANTHER	cellular component	5.6E-184
nucleoside transmembrane transport	PANTHER	biological process	5.6E-184