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GENE CARD

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  1. Gene 'KH2012:KH.L132.17'

Gene Card

Best human hits

HOXA10; HOXC10; HOXD10

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011050

Gene Model ID

KH2012:KH.L132.17

Location

KhL132:98494..102880

Transcript Models and Sequences

  KH2012:KH.L132.17.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001031
NCBI Reference Sequence NM_001032524.1
Collections

Gene collection 1 (N. Satoh)

2 results

cilv005f20

Plate: R1CiGC25g02

cilv028f24

Plate: R1CiGC27o12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_dom SMART Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_metazoa PRINTS Homeobox domain, metazoa
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom CDD Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom Pfam Homeobox domain

GOSlim

21 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
nuclear body Blast cellular component
sequence-specific DNA binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component
nuclear part Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 125 2.44e-32
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 119 9.47e-30
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 125 2.44e-32
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 119 9.47e-30
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 125 2.44e-32
DNA binding Hs molecular function 125 2.44e-32
chromatin binding Hs molecular function 125 2.44e-32
transcription factor activity, sequence-specific DNA binding Hs molecular function 125 2.44e-32
protein binding Hs molecular function 119 9.47e-30
nucleus Hs cellular component 125 2.44e-32
nucleoplasm Hs cellular component 125 2.44e-32
transcription factor complex Hs cellular component 119 9.47e-30
cytoplasm Hs cellular component 119 9.47e-30
cytosol Hs cellular component 125 2.44e-32
nuclear body Hs cellular component 120 1.28e-30
cyclin-dependent protein kinase activating kinase holoenzyme complex Hs cellular component 120 1.28e-30
cytoplasmic ribonucleoprotein granule Hs cellular component 125 2.44e-32
histone deacetylase binding Hs molecular function 119 9.47e-30
sequence-specific DNA binding Hs molecular function 125 2.44e-32

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 1.1E-26
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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