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Gene Card

Best human hits

EEF1A1; EEF1A2; TUFM

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010982

Gene Model ID

KH2012:KH.L13.14

Location

KhL13:245384..252449

Transcript Models and Sequences

  KH2012:KH.L13.14.v1.A.ND2-1
KH2012:KH.L13.14.v1.A.nonSL3-1
KH2012:KH.L13.14.v1.A.nonSL4-1
KH2012:KH.L13.14.v1.A.nonSL5-1
KH2012:KH.L13.14.v2.A.ND1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000002841
NCBI Reference Sequence XM_009862832.2
NCBI Reference Sequence XM_018815213.1
NCBI Reference Sequence XM_018815215.1
Collections

Gateway full ORF

2 results

cien49365

Plate: VES77_L23

cima840254

Plate: VES63_C18

Gene collection 1 (N. Satoh)

2 results

ciad006p16

Plate: R1CiGC01l23

ciad045h22

Plate: R1CiGC04j10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
TF_GTP-bd_dom PRINTS Transcription factor, GTP-binding domain
Transl_elong_EFTu/EF1A_C Pfam Translation elongation factor EFTu/EF1A, C-terminal
EFTu-like_2 Pfam Translation elongation factor EFTu-like, domain 2
Transl_elong_EF1A/Init_IF2_C SUPERFAMILY Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
TF_GTP-bd_dom Pfam Transcription factor, GTP-binding domain
Transl_B-barrel_sf SUPERFAMILY Translation protein, beta-barrel domain superfamily
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
EFTU_2 CDD Elongation factor Tu, domain 2
TF_GTP-bd_dom ProSiteProfiles Transcription factor, GTP-binding domain
G_TR_CS ProSitePatterns Tr-type G domain, conserved site

GOSlim

37 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
RNA binding Orthology molecular function
GTPase activity Orthology molecular function
protein binding Orthology molecular function
calmodulin binding Blast molecular function
GTP binding Orthology molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
intracellular Orthology cellular component
nucleus Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
mitochondrion Orthology cellular component
mitochondrial inner membrane Orthology cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
membrane Orthology cellular component
protein kinase binding Blast molecular function
neuronal cell body Blast cellular component
myelin sheath Orthology cellular component
extracellular exosome Orthology cellular component
regulation of gene expression Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
mitochondrial matrix Orthology cellular component
response to organic substance Orthology biological process
cytoplasmic part Blast cellular component
macromolecular complex Blast cellular component
cell periphery Blast cellular component
cytoskeletal part Blast cellular component
cell projection membrane Blast cellular component
cell leading edge Blast cellular component
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
membrane part Blast cellular component
lysosomal membrane Blast cellular component

GO (Orthology)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
RNA binding Hs molecular function
translation elongation factor activity Hs molecular function
GTPase activity Hs molecular function
protein binding Hs molecular function
GTP binding Hs molecular function
intracellular Hs cellular component
mitochondrion Hs cellular component
mitochondrial inner membrane Hs cellular component
translation Hs biological process
translational elongation Hs biological process
membrane Hs cellular component
mitochondrial nucleoid Hs cellular component
myelin sheath Hs cellular component
response to ethanol Hs biological process
extracellular exosome Hs cellular component

GO (Blast)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
tRNA binding Hs molecular function 150 1.59e-40
nucleotide binding Hs molecular function 486 2.55e-170
RNA binding Hs molecular function 486 2.55e-170
translation elongation factor activity Hs molecular function 486 2.55e-170
GTPase activity Hs molecular function 486 2.55e-170
protein binding Hs molecular function 486 2.55e-170
calmodulin binding Hs molecular function 150 1.59e-40
GTP binding Hs molecular function 486 2.55e-170
extracellular region Hs cellular component 150 1.59e-40
extracellular space Hs cellular component 150 1.59e-40
intracellular Hs cellular component 486 2.55e-170
nucleus Hs cellular component 150 1.59e-40
nucleolus Hs cellular component 150 1.59e-40
cytoplasm Hs cellular component 150 1.59e-40
mitochondrion Hs cellular component 486 2.55e-170
mitochondrial inner membrane Hs cellular component 486 2.55e-170
cytosol Hs cellular component 150 1.59e-40
eukaryotic translation elongation factor 1 complex Hs cellular component 150 1.59e-40
plasma membrane Hs cellular component 150 1.59e-40
translation factor activity, RNA binding Hs molecular function 150 1.86e-40
membrane Hs cellular component 486 2.55e-170
protein kinase binding Hs molecular function 150 1.59e-40
cortical actin cytoskeleton Hs cellular component 150 1.59e-40
ruffle membrane Hs cellular component 150 1.59e-40
secretory granule lumen Hs cellular component 150 1.59e-40
mitochondrial nucleoid Hs cellular component 486 2.55e-170
neuronal cell body Hs cellular component 150 1.86e-40
myelin sheath Hs cellular component 486 2.55e-170
extracellular exosome Hs cellular component 486 2.55e-170
cytoplasmic side of lysosomal membrane Hs cellular component 150 1.59e-40
ficolin-1-rich granule lumen Hs cellular component 150 1.59e-40

GO (InterProScan)

2 results

GO Term Analysis Type e-value
GTPase activity Pfam molecular function 3.8E-53
GTP binding Pfam molecular function 3.8E-53

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