Aniseed - Gene card

Gene 'KH2012:KH.L128.12'

Gene Card

Best human hits

HOXA3; HOXB3; MNX1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010957

Gene Model ID

KH2012:KH.L128.12

Location

KhL128:176548..180077

Transcript Models and Sequences

KH2012:KH.L128.12.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005724
NCBI Reference Sequence	NM_001128856.2

Collections

Gene collection 1 (N. Satoh)

1 result

cign044b23

Plate: R1CiGC42o14

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	SMART	Homeobox domain
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa
Homeobox_dom	CDD	Homeobox domain
Homeobox_dom	Pfam	Homeobox domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site

GOSlim

11 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
cytosol	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
sequence-specific DNA binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	95.9	1.25e-21
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	129	9.52e-34
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	95.9	1.25e-21
DNA binding	Hs	molecular function	129	9.52e-34
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	129	9.52e-34
protein binding	Hs	molecular function	95.1	3.10e-21
nucleus	Hs	cellular component	129	9.52e-34
nucleoplasm	Hs	cellular component	95.1	3.10e-21
nucleolus	Hs	cellular component	129	9.52e-34
cytosol	Hs	cellular component	129	9.52e-34
sequence-specific DNA binding	Hs	molecular function	129	9.52e-34
HMG box domain binding	Hs	molecular function	95.1	3.10e-21

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	1.9E-25
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function