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GENE CARD

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Gene Card

Best human hits

MTA1; MTA2; MTA3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010890

Gene Model ID

KH2012:KH.L122.11

Location

KhL122:35976..47009

Transcript Models and Sequences

  KH2012:KH.L122.11.v1.A.nonSL3-1
KH2012:KH.L122.11.v1.A.SL1-1
KH2012:KH.L122.11.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000006442
NCBI Reference Sequence NM_001078294.1
NCBI Reference Sequence XM_009862790.2
Collections

Gateway full ORF

2 results

cien139365

Plate: VES92_B02

cien172490

Plate: VES96_M23

Gene collection 1 (N. Satoh)

1 result

cicl015j16

Plate: R1CiGC10o13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
BAH_dom SMART Bromo adjacent homology (BAH) domain
Znf_GATA SMART Zinc finger, GATA-type
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
SANT/Myb SMART SANT/Myb domain
BAH_dom Pfam Bromo adjacent homology (BAH) domain
ELM2_dom ProSiteProfiles ELM2 domain
SANT_dom ProSiteProfiles SANT domain
MTA1_R1 Pfam Metastasis-associated protein MTA1, R1 domain
ELM2_dom SMART ELM2 domain
BAH_dom ProSiteProfiles Bromo adjacent homology (BAH) domain
ELM2_dom Pfam ELM2 domain

GOSlim

46 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription regulatory region sequence-specific DNA binding Orthology molecular function
transcription factor activity, transcription factor binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nuclear envelope Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
microtubule Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
signal transduction Orthology biological process
zinc ion binding Orthology molecular function
positive regulation of cell proliferation Orthology biological process
membrane Orthology cellular component
macromolecular complex Orthology cellular component
intracellular membrane-bounded organelle Orthology cellular component
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
negative regulation of nucleic acid-templated transcription Orthology biological process
nucleoplasm part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
transcription factor binding Orthology molecular function
organelle organization Orthology biological process
hydrolase activity Orthology molecular function
cellular protein modification process Orthology biological process
intracellular part Orthology cellular component
DNA repair Orthology biological process
DNA metabolic process Orthology biological process
G2/M transition of mitotic cell cycle Orthology biological process
protein modification by small protein conjugation Orthology biological process
macromolecular complex binding Orthology molecular function
regulation of gene expression Orthology biological process
enzyme binding Orthology molecular function
proteolysis Orthology biological process

GO (Orthology)

55 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
histone deacetylase complex Hs cellular component
negative regulation of transcription from RNA polymerase II promoter Hs biological process
nuclear chromatin Hs cellular component
transcription regulatory region sequence-specific DNA binding Hs molecular function
transcription factor activity, transcription factor binding Hs molecular function
core promoter sequence-specific DNA binding Hs molecular function
core promoter binding Hs molecular function
RNA polymerase II transcription factor binding Hs molecular function
RNA polymerase II repressing transcription factor binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
transcription corepressor activity Hs molecular function
histone deacetylase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nuclear envelope Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
microtubule Hs cellular component
double-strand break repair Hs biological process
DNA methylation Hs biological process
chromatin assembly or disassembly Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
signal transduction Hs biological process
zinc ion binding Hs molecular function
positive regulation of cell proliferation Hs biological process
response to ionizing radiation Hs biological process
positive regulation of G2/M transition of mitotic cell cycle Hs biological process
membrane Hs cellular component
histone deacetylation Hs biological process
NuRD complex Hs cellular component
protein sumoylation Hs biological process
nucleosomal DNA binding Hs molecular function
circadian regulation of gene expression Hs biological process
macromolecular complex Hs cellular component
regulation of gene expression, epigenetic Hs biological process
histone deacetylase binding Hs molecular function
ATP-dependent chromatin remodeling Hs biological process
entrainment of circadian clock by photoperiod Hs biological process
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
intracellular membrane-bounded organelle Hs cellular component
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
locomotor rhythm Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
rhythmic process Hs biological process
negative regulation of nucleic acid-templated transcription Hs biological process

GO (Blast)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone deacetylase complex Hs cellular component 684 0.0
nuclear chromatin Hs cellular component 684 0.0
transcription regulatory region sequence-specific DNA binding Hs molecular function 684 0.0
transcription factor activity, transcription factor binding Hs molecular function 684 0.0
core promoter sequence-specific DNA binding Hs molecular function 694 0.0
core promoter binding Hs molecular function 694 0.0
RNA polymerase II transcription factor binding Hs molecular function 684 0.0
RNA polymerase II repressing transcription factor binding Hs molecular function 694 0.0
DNA binding Hs molecular function 694 0.0
chromatin binding Hs molecular function 694 0.0
transcription factor activity, sequence-specific DNA binding Hs molecular function 694 0.0
transcription coactivator activity Hs molecular function 694 0.0
transcription corepressor activity Hs molecular function 694 0.0
histone deacetylase activity Hs molecular function 694 0.0
protein binding Hs molecular function 694 0.0
nucleus Hs cellular component 694 0.0
nuclear envelope Hs cellular component 694 0.0
nucleoplasm Hs cellular component 694 0.0
transcription factor complex Hs cellular component 684 0.0
cytoplasm Hs cellular component 694 0.0
cytosol Hs cellular component 694 0.0
cytoskeleton Hs cellular component 694 0.0
microtubule Hs cellular component 694 0.0
zinc ion binding Hs molecular function 694 0.0
membrane Hs cellular component 684 0.0
NuRD complex Hs cellular component 684 0.0
nucleosomal DNA binding Hs molecular function 684 0.0
macromolecular complex Hs cellular component 684 0.0
histone deacetylase binding Hs molecular function 684 0.0
intracellular membrane-bounded organelle Hs cellular component 694 0.0
sequence-specific DNA binding Hs molecular function 694 0.0
transcription regulatory region DNA binding Hs molecular function 684 0.0
metal ion binding Hs molecular function 694 0.0

GO (InterProScan)

6 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 5.08E-12
chromatin binding SMART molecular function 3.4E-30
transcription factor activity, sequence-specific DNA binding SMART molecular function 4.2E-7
regulation of transcription, DNA-templated SMART biological process 4.2E-7
zinc ion binding SMART molecular function 4.2E-7
sequence-specific DNA binding SMART molecular function 4.2E-7

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