Aniseed - Gene card

Gene 'KH2012:KH.L116.79'

Gene Card

Best human hits

NPLOC4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010812

Gene Model ID

KH2012:KH.L116.79

Location

KhL116:70738..73662

Transcript Models and Sequences

KH2012:KH.L116.79.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000015372
NCBI Reference Sequence	XM_002123938.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg032p16

Plate: R1CiGC20l16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
NPL4_C	Pfam	Nuclear pore localisation protein NPL4, C-terminal
MPN	ProSiteProfiles	MPN domain
Npl4	PIRSF	Nuclear protein localization protein 4
NPL4_C	CDD	Nuclear pore localisation protein NPL4, C-terminal
NPL4_Zn-bd_put	Pfam	NPL4, zinc-binding putative

GOSlim

17 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ubiquitin protein ligase binding	Orthology	molecular function
nuclear outer membrane-endoplasmic reticulum membrane network	Orthology	cellular component
metal ion binding	Orthology	molecular function
proteolysis	Orthology	biological process
organelle organization	Orthology	biological process
cellular response to stress	Orthology	biological process
response to organic substance	Orthology	biological process
intracellular protein transport	Orthology	biological process
endoplasmic reticulum membrane	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cytoplasmic part	Orthology	cellular component

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ubiquitin-dependent protein catabolic process	Hs	biological process
Golgi organization	Hs	biological process
ubiquitin-dependent ERAD pathway	Hs	biological process
retrograde protein transport, ER to cytosol	Hs	biological process
ubiquitin protein ligase binding	Hs	molecular function
negative regulation of type I interferon production	Hs	biological process
VCP-NPL4-UFD1 AAA ATPase complex	Hs	cellular component
UFD1-NPL4 complex	Hs	cellular component
nuclear outer membrane-endoplasmic reticulum membrane network	Hs	cellular component
ubiquitin binding	Hs	molecular function
proteasome-mediated ubiquitin-dependent protein catabolic process	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	439	2.65e-150
nucleus	Hs	cellular component	439	2.65e-150
nucleoplasm	Hs	cellular component	439	2.65e-150
cytoplasm	Hs	cellular component	439	2.65e-150
endoplasmic reticulum	Hs	cellular component	439	2.65e-150
cytosol	Hs	cellular component	439	2.65e-150
ubiquitin protein ligase binding	Hs	molecular function	439	2.65e-150
VCP-NPL4-UFD1 AAA ATPase complex	Hs	cellular component	439	2.65e-150
UFD1-NPL4 complex	Hs	cellular component	439	2.65e-150
nuclear outer membrane-endoplasmic reticulum membrane network	Hs	cellular component	439	2.65e-150
ubiquitin binding	Hs	molecular function	439	2.65e-150
metal ion binding	Hs	molecular function	439	2.65e-150

GO (InterProScan)