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GENE CARD

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  1. Gene 'KH2012:KH.L112.2'

Gene Card

Best human hits

MED15

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010694

Gene Model ID

KH2012:KH.L112.2

Location

KhL112:102600..109572

Transcript Models and Sequences

  KH2012:KH.L112.2.v1.A.nonSL10-2
KH2012:KH.L112.2.v1.A.nonSL11-2
KH2012:KH.L112.2.v1.A.nonSL3-2
KH2012:KH.L112.2.v1.A.nonSL4-2
KH2012:KH.L112.2.v1.A.nonSL5-2
KH2012:KH.L112.2.v1.A.nonSL6-2
KH2012:KH.L112.2.v1.A.nonSL8-2
KH2012:KH.L112.2.v1.A.nonSL9-2
KH2012:KH.L112.2.v1.A.SL1-2
KH2012:KH.L112.2.v1.A.SL2-2
KH2012:KH.L112.2.v2.A.nonSL10-1
KH2012:KH.L112.2.v2.A.nonSL11-1
KH2012:KH.L112.2.v2.A.nonSL3-1
KH2012:KH.L112.2.v2.A.nonSL4-1
KH2012:KH.L112.2.v2.A.nonSL5-1
KH2012:KH.L112.2.v2.A.nonSL6-1
KH2012:KH.L112.2.v2.A.nonSL8-1
KH2012:KH.L112.2.v2.A.nonSL9-1
KH2012:KH.L112.2.v2.A.SL1-1
KH2012:KH.L112.2.v2.A.SL2-1
KH2012:KH.L112.2.v3.A.nonSL10-2
KH2012:KH.L112.2.v3.A.nonSL11-2
KH2012:KH.L112.2.v3.A.nonSL3-2
KH2012:KH.L112.2.v3.A.nonSL4-2
KH2012:KH.L112.2.v3.A.nonSL5-2
KH2012:KH.L112.2.v3.A.nonSL6-2
KH2012:KH.L112.2.v3.A.nonSL8-2
KH2012:KH.L112.2.v3.A.nonSL9-2
KH2012:KH.L112.2.v3.A.SL1-2
KH2012:KH.L112.2.v3.A.SL2-2
KH2012:KH.L112.2.v4.A.nonSL10-1
KH2012:KH.L112.2.v4.A.nonSL11-1
KH2012:KH.L112.2.v4.A.nonSL3-1
KH2012:KH.L112.2.v4.A.nonSL4-1
KH2012:KH.L112.2.v4.A.nonSL5-1
KH2012:KH.L112.2.v4.A.nonSL6-1
KH2012:KH.L112.2.v4.A.nonSL8-1
KH2012:KH.L112.2.v4.A.nonSL9-1
KH2012:KH.L112.2.v4.A.SL1-1
KH2012:KH.L112.2.v4.A.SL2-1
KH2012:KH.L112.2.v5.A.SL7-1
KH2012:KH.L112.2.v6.A.SL7-2
KH2012:KH.L112.2.v7.A.SL7-1
KH2012:KH.L112.2.v8.A.SL7-2

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002127309.4
Collections

Gateway full ORF

2 results

cima8105717

Plate: VES73_L15

cien231197

Plate: VES105_E22

Gene collection 1 (N. Satoh)

2 results

cieg054d24

Plate: R1CiGC24m05

citb093m21

Plate: R1CiGC46d04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term Analysis Definition
Med15 Pfam Mediator of RNA polymerase II transcription subunit 15

GOSlim

11 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
membrane Orthology cellular component
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component

GO (Orthology)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription cofactor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
membrane Hs cellular component
mediator complex Hs cellular component

GO (Blast)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription cofactor activity Hs molecular function 167 9.22e-44
protein binding Hs molecular function 167 9.22e-44
nucleus Hs cellular component 167 9.22e-44
nucleoplasm Hs cellular component 167 9.22e-44
cytoplasm Hs cellular component 167 9.22e-44
membrane Hs cellular component 167 9.22e-44
mediator complex Hs cellular component 167 9.22e-44

GO (InterProScan)

3 results

GO Term Analysis Type e-value
RNA polymerase II transcription cofactor activity Pfam molecular function 1.6E-49
regulation of transcription from RNA polymerase II promoter Pfam biological process 1.6E-49
mediator complex Pfam cellular component 1.6E-49

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