Aniseed - Gene card

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000015922

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl041c19

Plate: R1CiGC12b05

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term	Analysis	Definition
FTHF_cligase	Pfam	5-formyltetrahydrofolate cyclo-ligase
FTHF_cligase	TIGRFAM	5-formyltetrahydrofolate cyclo-ligase
FTHF_cligase-like_sf	Gene3D	5-formyltetrahydrofolate cyclo-ligase-like domain superfamily
FTHF_cligase	PANTHER	5-formyltetrahydrofolate cyclo-ligase
FTHF_cligase	PIRSF	5-formyltetrahydrofolate cyclo-ligase
NagB/RpiA_transferase-like	SUPERFAMILY	NagB/RpiA transferase-like
Zn_ribbon_RPC11_C	CDD	Pol III subunit C11, C-terminal zinc ribbon
DNA-dir_RNA_pol-M_15_CS	ProSitePatterns	DNA-directed RNA polymerase M, 15kDa subunit, conserved site
Znf_TFIIS	Pfam	Zinc finger, TFIIS-type
DNA-dir_RNA_pol_M/15kDasu	Pfam	DNA-directed RNA polymerase, M/15kDa subunit
Znf_TFIIS	ProSiteProfiles	Zinc finger, TFIIS-type
Znf_TFIIS	SMART	Zinc finger, TFIIS-type
DNA-dir_RNA_pol_M/15kDasu	SMART	DNA-directed RNA polymerase, M/15kDa subunit

GOSlim

28 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
nucleic acid binding	Blast	molecular function
ATP binding	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
cytosol	Orthology	cellular component
transcription, DNA-templated	Blast	biological process
zinc ion binding	Blast	molecular function
ligase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
small molecule binding	Orthology	molecular function
anion binding	Orthology	molecular function
heterocyclic compound binding	Orthology	molecular function
organic cyclic compound binding	Orthology	molecular function
cellular metabolic process	Orthology	biological process
amide biosynthetic process	Orthology	biological process
cellular aromatic compound metabolic process	Orthology	biological process
nuclear lumen	Blast	cellular component
transferase activity, transferring phosphorus-containing groups	Blast	molecular function
intracellular non-membrane-bounded organelle	Blast	cellular component
RNA biosynthetic process	Blast	biological process
nuclear part	Blast	cellular component
macromolecular complex	Blast	cellular component
RNA metabolic process	InterProScan	biological process

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
ATP binding	Hs	molecular function
folic acid binding	Hs	molecular function
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
cytosol	Hs	cellular component
glutamate metabolic process	Hs	biological process
folic acid-containing compound biosynthetic process	Hs	biological process
ligase activity	Hs	molecular function
5-formyltetrahydrofolate cyclo-ligase activity	Hs	molecular function
tetrahydrofolate interconversion	Hs	biological process
tetrahydrofolate metabolic process	Hs	biological process
folic acid metabolic process	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	139	4.35e-40
RNA polymerase III activity	Hs	molecular function	192	1.08e-61
nucleic acid binding	Hs	molecular function	192	1.08e-61
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function	192	1.08e-61
ATP binding	Hs	molecular function	139	4.35e-40
folic acid binding	Hs	molecular function	135	4.68e-38
nucleus	Hs	cellular component	192	1.08e-61
nucleoplasm	Hs	cellular component	192	1.08e-61
DNA-directed RNA polymerase III complex	Hs	cellular component	192	1.08e-61
nucleolus	Hs	cellular component	192	1.08e-61
cytoplasm	Hs	cellular component	135	4.68e-38
mitochondrion	Hs	cellular component	139	4.35e-40
mitochondrial matrix	Hs	cellular component	135	4.68e-38
cytosol	Hs	cellular component	192	1.08e-61
zinc ion binding	Hs	molecular function	192	1.08e-61
ligase activity	Hs	molecular function	135	4.68e-38
5-formyltetrahydrofolate cyclo-ligase activity	Hs	molecular function	139	4.35e-40
metal ion binding	Hs	molecular function	192	1.08e-61

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	6.1E-18
transcription, DNA-templated	Pfam	biological process	6.1E-18
mRNA cleavage	CDD	biological process	4.54749E-28
zinc ion binding	Pfam	molecular function	6.1E-18

Gene Card

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