Aniseed - Gene card

Gene Card

Best human hits

LHX1; LHX5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010599

Gene Model ID

KH2012:KH.L107.7

Location

KhL107:34567..37848

Transcript Models and Sequences

KH2012:KH.L107.7.v1.A.ND1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000019733
NCBI Reference Sequence	XM_009862654.2

Collections

Gene collection 1 (N. Satoh)

1 result

cilv076a07

Plate: R1CiGC44f09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Znf_LIM	ProSiteProfiles	Zinc finger, LIM-type
Znf_LIM	SMART	Zinc finger, LIM-type
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	Pfam	Homeobox domain
Znf_LIM	ProSitePatterns	Zinc finger, LIM-type
Homeobox_dom	SMART	Homeobox domain
Homeobox_dom	CDD	Homeobox domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Znf_LIM	Pfam	Zinc finger, LIM-type

GOSlim

36 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription corepressor activity	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
cell-cell signaling	Orthology	biological process
multicellular organism development	Orthology	biological process
nervous system development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process
macromolecular complex	Orthology	cellular component
regulation of cell proliferation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription, DNA-templated	Orthology	biological process
metal ion binding	Orthology	molecular function
anatomical structure formation involved in morphogenesis	Orthology	biological process
head development	Orthology	biological process
system development	Orthology	biological process
animal organ development	Orthology	biological process
axon guidance	Orthology	biological process
central nervous system development	Orthology	biological process
neuron differentiation	Orthology	biological process
brain development	Orthology	biological process
cell proliferation	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
reproductive process	Orthology	biological process
anatomical structure development	Orthology	biological process
cell migration	Orthology	biological process
generation of neurons	Orthology	biological process

GO (Orthology)

70 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
urogenital system development	Hs	biological process
ureteric bud development	Hs	biological process
branching involved in ureteric bud morphogenesis	Hs	biological process
gastrulation with mouth forming second	Hs	biological process
ectoderm formation	Hs	biological process
endoderm formation	Hs	biological process
kidney development	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription corepressor activity	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
cell-cell signaling	Hs	biological process
multicellular organism development	Hs	biological process
pattern specification process	Hs	biological process
nervous system development	Hs	biological process
motor neuron axon guidance	Hs	biological process
anatomical structure morphogenesis	Hs	biological process
post-embryonic development	Hs	biological process
embryonic pattern specification	Hs	biological process
animal organ morphogenesis	Hs	biological process
anterior/posterior axis specification	Hs	biological process
anterior/posterior pattern specification	Hs	biological process
dorsal/ventral pattern formation	Hs	biological process
regulation of gene expression	Hs	biological process
retina layer formation	Hs	biological process
spinal cord development	Hs	biological process
ventral spinal cord development	Hs	biological process
spinal cord association neuron differentiation	Hs	biological process
telencephalon development	Hs	biological process
cerebellum development	Hs	biological process
cerebellar Purkinje cell differentiation	Hs	biological process
cell proliferation in forebrain	Hs	biological process
forebrain regionalization	Hs	biological process
forebrain neuron differentiation	Hs	biological process
cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation	Hs	biological process
cell differentiation	Hs	biological process
somite rostral/caudal axis specification	Hs	biological process
macromolecular complex	Hs	cellular component
positive regulation of embryonic development	Hs	biological process
regulation of cell proliferation	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
negative regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
metal ion binding	Hs	molecular function
anatomical structure formation involved in morphogenesis	Hs	biological process
embryonic viscerocranium morphogenesis	Hs	biological process
pronephros development	Hs	biological process
retina development in camera-type eye	Hs	biological process
embryonic retina morphogenesis in camera-type eye	Hs	biological process
uterus development	Hs	biological process
head development	Hs	biological process
epithelium development	Hs	biological process
paramesonephric duct development	Hs	biological process
renal system development	Hs	biological process
comma-shaped body morphogenesis	Hs	biological process
S-shaped body morphogenesis	Hs	biological process
renal vesicle morphogenesis	Hs	biological process
nephric duct morphogenesis	Hs	biological process
primitive streak formation	Hs	biological process
positive regulation of branching involved in ureteric bud morphogenesis	Hs	biological process
lateral motor column neuron migration	Hs	biological process
positive regulation of gastrulation	Hs	biological process
positive regulation of anterior head development	Hs	biological process
positive regulation of nephron tubule epithelial cell differentiation	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	216	1.60e-66
DNA binding	Hs	molecular function	216	1.60e-66
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	212	8.23e-65
transcription corepressor activity	Hs	molecular function	212	8.23e-65
intracellular	Hs	cellular component	212	8.23e-65
nucleus	Hs	cellular component	216	1.60e-66
macromolecular complex	Hs	cellular component	212	8.23e-65
sequence-specific DNA binding	Hs	molecular function	216	1.60e-66
metal ion binding	Hs	molecular function	216	1.60e-66

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	1.5E-21
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function