Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000001251
NCBI Reference Sequence	NM_001078532.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl090l02

Plate: R1CiGC39d05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

4 results

Ci-Nodal -2260/-1732 REG00000712 [ no_output ]
- Ci-Nodal -1918/-1771 REG00000227 [ regulatory_region (enhancer) ]
  - Nodal -1918/-1772bp Fox2 mutated REG00000231 [ regulatory_region (enhancer) ]
- Ci-Nodal -2260/-2078 REG00000310 [ regulatory_region (enhancer) ]

Cirobu.REG.KH2012.L106:34858-35128|Nodal REG00001408 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
TGFb_CS	ProSitePatterns	Transforming growth factor beta, conserved site
Cystine-knot_cytokine	Gene3D	Cystine-knot cytokine
TGF-b_C	Pfam	Transforming growth factor-beta, C-terminal
TGF-b_C	ProSiteProfiles	Transforming growth factor-beta, C-terminal
Cystine-knot_cytokine	SUPERFAMILY	Cystine-knot cytokine
TGF-b_C	SMART	Transforming growth factor-beta, C-terminal
TGF-beta-rel	PANTHER	Transforming growth factor-beta-related

GOSlim

45 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
angiogenesis	Orthology	biological process
vasculature development	Orthology	biological process
protein binding	Blast	molecular function
extracellular region	Orthology	cellular component
extracellular space	Orthology	cellular component
cell	Blast	cellular component
cytoplasm	Blast	cellular component
cell adhesion	Orthology	biological process
multicellular organism development	Orthology	biological process
nervous system development	Orthology	biological process
brain development	Orthology	biological process
heart development	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
regulation of signal transduction	Orthology	biological process
cell surface	Blast	cellular component
cell migration	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
cell development	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
extracellular exosome	Blast	cellular component
animal organ development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
receptor binding	Orthology	molecular function
molecular function regulator	Orthology	molecular function
signaling receptor activity	Orthology	molecular function
anatomical structure development	Orthology	biological process
regulation of molecular function	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
protein phosphorylation	Orthology	biological process
developmental process	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
cellular response to organic substance	Orthology	biological process
cell differentiation	Orthology	biological process
endopeptidase activity	Orthology	molecular function
positive regulation of hydrolase activity	Orthology	biological process
positive regulation of apoptotic process	Orthology	biological process
system development	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
organelle part	Blast	cellular component
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
cytoskeletal protein binding	Blast	molecular function

GO (Orthology)

59 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
gastrulation with mouth forming second	Hs	biological process
mesoderm formation	Hs	biological process
liver development	Hs	biological process
vasculature development	Hs	biological process
heart looping	Hs	biological process
cytokine activity	Hs	molecular function
transforming growth factor beta receptor binding	Hs	molecular function
extracellular region	Hs	cellular component
extracellular space	Hs	cellular component
multicellular organism development	Hs	biological process
determination of left/right symmetry	Hs	biological process
gastrulation	Hs	biological process
nervous system development	Hs	biological process
brain development	Hs	biological process
endoderm development	Hs	biological process
heart development	Hs	biological process
growth factor activity	Hs	molecular function
positive regulation of cell proliferation	Hs	biological process
embryonic pattern specification	Hs	biological process
anterior/posterior axis specification	Hs	biological process
anterior/posterior pattern specification	Hs	biological process
regulation of signal transduction	Hs	biological process
polarity specification of proximal/distal axis	Hs	biological process
regulation of receptor activity	Hs	biological process
regulation of gastrulation	Hs	biological process
positive regulation of vascular endothelial growth factor production	Hs	biological process
positive regulation of pathway-restricted SMAD protein phosphorylation	Hs	biological process
morphogen activity	Hs	molecular function
cell migration	Hs	biological process
stem cell population maintenance	Hs	biological process
positive regulation of cell-cell adhesion	Hs	biological process
lung development	Hs	biological process
BMP signaling pathway	Hs	biological process
positive regulation of activin receptor signaling pathway	Hs	biological process
embryonic heart tube development	Hs	biological process
endodermal cell differentiation	Hs	biological process
nodal signaling pathway	Hs	biological process
cell migration involved in gastrulation	Hs	biological process
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	Hs	biological process
cell fate commitment	Hs	biological process
negative regulation of cell differentiation	Hs	biological process
positive regulation of angiogenesis	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
receptor ligand activity	Hs	molecular function
mesendoderm development	Hs	biological process
cell development	Hs	biological process
digestive tract morphogenesis	Hs	biological process
anatomical structure formation involved in morphogenesis	Hs	biological process
embryonic cranial skeleton morphogenesis	Hs	biological process
tissue morphogenesis	Hs	biological process
formation of anatomical boundary	Hs	biological process
positive regulation of epithelial cell proliferation	Hs	biological process
positive regulation of sequence-specific DNA binding transcription factor activity	Hs	biological process
digestive system development	Hs	biological process
SMAD protein signal transduction	Hs	biological process
positive regulation of ERK1 and ERK2 cascade	Hs	biological process
type I activin receptor binding	Hs	molecular function
primitive streak formation	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
cytokine activity	Hs	molecular function	140	3.20e-38
transforming growth factor beta receptor binding	Hs	molecular function	140	3.20e-38
hormone activity	Hs	molecular function	117	4.07e-29
protein binding	Hs	molecular function	117	4.07e-29
extracellular region	Hs	cellular component	140	3.20e-38
extracellular space	Hs	cellular component	140	3.20e-38
cell	Hs	cellular component	115	1.96e-28
cytoplasm	Hs	cellular component	117	4.07e-29
growth factor activity	Hs	molecular function	140	3.20e-38
cell surface	Hs	cellular component	117	4.07e-29
morphogen activity	Hs	molecular function	140	3.20e-38
Z disc	Hs	cellular component	117	4.07e-29
telethonin binding	Hs	molecular function	117	4.07e-29
receptor serine/threonine kinase binding	Hs	molecular function	117	4.07e-29
receptor ligand activity	Hs	molecular function	140	3.20e-38
extracellular exosome	Hs	cellular component	115	1.96e-28
type I activin receptor binding	Hs	molecular function	140	3.20e-38

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
growth factor activity	SMART	molecular function	3.5E-54

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences