Aniseed - Gene card

Gene Card

Best human hits

BTBD9; SPOP; SPOPL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010519

Gene Model ID

KH2012:KH.L10.29

Location

KhL10:85585..89108

Transcript Models and Sequences

KH2012:KH.L10.29.v1.A.SL1-1
KH2012:KH.L10.29.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004284
NCBI Reference Sequence	XM_002129149.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg019o04

Plate: R1CiGC18j09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
TRAF-like	SUPERFAMILY	TRAF-like
MATH/TRAF_dom	SMART	MATH/TRAF domain
MATH/TRAF_dom	ProSiteProfiles	MATH/TRAF domain
TRAF-like	Gene3D	TRAF-like
BTB/POZ_dom	ProSiteProfiles	BTB/POZ domain
BTB/POZ_dom	Pfam	BTB/POZ domain
SPOP_C	CDD	SPOP, C-terminal BACK-like domain
BTB/POZ_dom	SMART	BTB/POZ domain
MATH/TRAF_dom	Pfam	MATH/TRAF domain
SKP1/BTB/POZ_sf	SUPERFAMILY	SKP1/BTB/POZ domain superfamily

GOSlim

14 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
protein ubiquitination	Orthology	biological process
nuclear speck	Orthology	cellular component
ubiquitin protein ligase binding	Orthology	molecular function
transcription factor binding	Orthology	molecular function
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
proteolysis	Orthology	biological process
regulation of molecular function	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II transcription factor binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
protein ubiquitination	Hs	biological process
nuclear speck	Hs	cellular component
SCF ubiquitin ligase complex	Hs	cellular component
regulation of proteolysis	Hs	biological process
negative regulation of protein ubiquitination	Hs	biological process
Cul3-RING ubiquitin ligase complex	Hs	cellular component
ubiquitin protein ligase binding	Hs	molecular function
glucose homeostasis	Hs	biological process
proteasome-mediated ubiquitin-dependent protein catabolic process	Hs	biological process
negative regulation of sequence-specific DNA binding transcription factor activity	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
RNA polymerase II transcription factor binding	Hs	molecular function	586
protein binding	Hs	molecular function	586
nucleus	Hs	cellular component	586
nucleoplasm	Hs	cellular component	586
cytoplasm	Hs	cellular component	586
nuclear speck	Hs	cellular component	586
SCF ubiquitin ligase complex	Hs	cellular component	586
Cul3-RING ubiquitin ligase complex	Hs	cellular component	586
ubiquitin protein ligase binding	Hs	molecular function	586

GO (InterProScan)