Aniseed - Gene card

Gene Card

Best human hits

TDRD1; TDRD5; TDRD7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010441

Gene Model ID

KH2012:KH.C9.853

Location

KhC9:6258762..6262863

Transcript Models and Sequences

KH2012:KH.C9.853.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018306
NCBI Reference Sequence	XM_002128153.3

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

cits037h08

Plate: R1CiGC34b22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
OST-HTH/LOTUS_dom	ProSiteProfiles	OST-HTH/LOTUS domain
Tudor	SMART	Tudor domain
Tudor	Pfam	Tudor domain
OST-HTH/LOTUS_dom	Pfam	OST-HTH/LOTUS domain
Tudor	ProSiteProfiles	Tudor domain
SNase_OB-fold_sf	Gene3D	SNase-like, OB-fold superfamily

GOSlim

14 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
spermatogenesis	Orthology	biological process
cell differentiation	Orthology	biological process
metal ion binding	Blast	molecular function
protein N-terminus binding	Orthology	molecular function
anatomical structure morphogenesis	Orthology	biological process
animal organ development	Orthology	biological process
regulation of gene expression	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
lens morphogenesis in camera-type eye	Hs	biological process
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
mitochondrial matrix	Hs	cellular component
spermatogenesis	Hs	biological process
posttranscriptional regulation of gene expression	Hs	biological process
cell differentiation	Hs	biological process
chromatoid body	Hs	cellular component
ribonucleoprotein granule	Hs	cellular component
protein N-terminus binding	Hs	molecular function
lens fiber cell differentiation	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	91.7	1.80e-18
mRNA binding	Hs	molecular function	91.7	1.80e-18
protein binding	Hs	molecular function	91.7	1.80e-18
cytoplasm	Hs	cellular component	91.7	1.80e-18
mitochondrial matrix	Hs	cellular component	91.7	1.80e-18
intracellular ribonucleoprotein complex	Hs	cellular component	64.3	3.79e-10
chromatoid body	Hs	cellular component	91.7	1.80e-18
ribonucleoprotein granule	Hs	cellular component	91.7	1.80e-18
P granule	Hs	cellular component	64.3	3.79e-10
metal ion binding	Hs	molecular function	64.3	3.79e-10
protein N-terminus binding	Hs	molecular function	91.7	1.80e-18
pi-body	Hs	cellular component	64.3	3.79e-10

GO (InterProScan)