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Gene Card

Best human hits

FOXF1; FOXH1; FOXQ1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010291

Gene Model ID

KH2012:KH.C9.717

Location

KhC9:3568217..3572355

Transcript Models and Sequences

  KH2012:KH.C9.717.v1.A.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence NM_001078524.1
Collections

Gateway full ORF

2 results

cien50271

Plate: VES78_F03

cien194100

Plate: VES100_G09

Gene collection 1 (N. Satoh)

1 result

citb038e24

Plate: R1CiGC32f03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Fork_head_dom Pfam Fork head domain
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2
Fork_head_dom ProSiteProfiles Fork head domain
Fork_head_dom CDD Fork head domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
Fork_head_dom PRINTS Fork head domain
TF_fork_head_CS_1 ProSitePatterns Fork head domain conserved site1
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Fork_head_dom SMART Fork head domain

GOSlim

34 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
heart development Orthology biological process
anatomical structure morphogenesis Orthology biological process
cell differentiation Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
multicellular organism development Orthology biological process
nuclear part Orthology cellular component
negative regulation of signal transduction Orthology biological process
response to lipid Orthology biological process
transcription factor binding Orthology molecular function
anatomical structure development Orthology biological process
receptor binding Orthology molecular function

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
nuclear chromatin Hs cellular component
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription cofactor activity Hs molecular function
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
heart looping Hs biological process
outflow tract morphogenesis Hs biological process
ventricular trabecula myocardium morphogenesis Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transforming growth factor beta receptor signaling pathway Hs biological process
determination of left/right symmetry Hs biological process
anatomical structure morphogenesis Hs biological process
anterior/posterior pattern specification Hs biological process
protein domain specific binding Hs molecular function
cell differentiation Hs biological process
activin responsive factor complex Hs cellular component
negative regulation of intracellular estrogen receptor signaling pathway Hs biological process
embryonic heart tube anterior/posterior pattern specification Hs biological process
enhancer binding Hs molecular function
bHLH transcription factor binding Hs molecular function
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
SMAD binding Hs molecular function
axial mesoderm development Hs biological process
androgen receptor binding Hs molecular function
co-SMAD binding Hs molecular function
R-SMAD binding Hs molecular function

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 104 6.24e-25
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 75.9 4.41e-15
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 77.8 1.39e-15
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 104 6.24e-25
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 77.8 1.39e-15
RNA polymerase II transcription cofactor activity Hs molecular function 104 6.24e-25
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 104 6.24e-25
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 104 6.24e-25
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 75.9 4.41e-15
DNA binding Hs molecular function 104 6.24e-25
transcription factor activity, sequence-specific DNA binding Hs molecular function 104 6.24e-25
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 104 6.24e-25
protein binding Hs molecular function 104 6.24e-25
nucleus Hs cellular component 104 6.24e-25
nucleoplasm Hs cellular component 104 6.24e-25
transcription factor complex Hs cellular component 104 6.24e-25
protein domain specific binding Hs molecular function 104 6.24e-25
activin responsive factor complex Hs cellular component 104 6.24e-25
enhancer binding Hs molecular function 104 6.24e-25
bHLH transcription factor binding Hs molecular function 104 6.24e-25
sequence-specific DNA binding Hs molecular function 104 6.24e-25
transcription regulatory region DNA binding Hs molecular function 104 6.24e-25
SMAD binding Hs molecular function 104 6.24e-25
androgen receptor binding Hs molecular function 104 6.24e-25
co-SMAD binding Hs molecular function 104 6.24e-25
R-SMAD binding Hs molecular function 104 6.24e-25

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 3.1E-36
regulation of transcription, DNA-templated SMART biological process 3.1E-36
sequence-specific DNA binding SMART molecular function 3.1E-36

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