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GENE CARD

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  1. Gene 'KH2012:KH.C9.701'

Gene Card

Best human hits

CLVS1; RLBP1; TTPAL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010274

Gene Model ID

KH2012:KH.C9.701

Location

KhC9:2266728..2267820

Transcript Models and Sequences

  KH2012:KH.C9.701.v1.C.nonSL2-1
KH2012:KH.C9.701.v1.R.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002124890.3
Collections

Gateway full ORF

2 results

cien46396

Plate: VES77_D14

cien126975

Plate: VES90_A04

Gene collection 1 (N. Satoh)

1 result

cicl046f07

Plate: R1CiGC13c12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
CRAL-TRIO_dom_sf SUPERFAMILY CRAL-TRIO lipid binding domain superfamily
CRAL/TRIO_N_dom Pfam CRAL/TRIO, N-terminal domain
CRAL/TRIO_N_dom SMART CRAL/TRIO, N-terminal domain
CRAL-TRIO_dom SMART CRAL-TRIO lipid binding domain
CRAL-TRIO_dom ProSiteProfiles CRAL-TRIO lipid binding domain
CRAL-TRIO_dom Pfam CRAL-TRIO lipid binding domain
CRAL-TRIO_dom_sf Gene3D CRAL-TRIO lipid binding domain superfamily
CRAL-TRIO_dom CDD CRAL-TRIO lipid binding domain
CRAL/TRIO_N_dom_sf SUPERFAMILY CRAL/TRIO, N-terminal domain superfamily

GOSlim

16 results

GO Term Annotation Origin Type
cytoplasm Blast cellular component
endosome Blast cellular component
Golgi apparatus Blast cellular component
cytosol Blast cellular component
membrane Blast cellular component
cytoplasmic vesicle Blast cellular component
cell body Blast cellular component
small molecule binding Blast molecular function
Golgi apparatus part Blast cellular component
binding Blast molecular function
whole membrane Blast cellular component
intracellular organelle part Blast cellular component
early endosome Blast cellular component
bounding membrane of organelle Blast cellular component
Golgi membrane Blast cellular component
anion binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
11-cis retinal binding Hs molecular function 125 2.42e-34
cytoplasm Hs cellular component 125 2.42e-34
endosome Hs cellular component 117 8.38e-31
Golgi apparatus Hs cellular component 117 8.38e-31
trans-Golgi network Hs cellular component 117 8.38e-31
cytosol Hs cellular component 125 2.42e-34
lipid binding Hs molecular function 117 8.38e-31
membrane Hs cellular component 147 3.57e-42
retinal binding Hs molecular function 125 2.42e-34
retinol binding Hs molecular function 125 2.42e-34
clathrin-coated vesicle Hs cellular component 117 8.38e-31
cytoplasmic vesicle Hs cellular component 117 8.38e-31
early endosome membrane Hs cellular component 117 8.38e-31
trans-Golgi network membrane Hs cellular component 117 8.38e-31
cell body Hs cellular component 125 2.42e-34
phosphatidylinositol-3,5-bisphosphate binding Hs molecular function 117 8.38e-31

GO (InterProScan)

No result

GO Term Analysis Type e-value

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