Gene Card
Best human hits
PRPF40A; PRPF40B; WAC
Unique Gene ID
Cirobu.g00009842
Gene Model ID
KH2012:KH.C9.309
Location
KhC9:388712..397530
Transcript Models and Sequences
KH2012:KH.C9.309.v1.A.nonSL3-1
KH2012:KH.C9.309.v1.A.nonSL4-1
KH2012:KH.C9.309.v1.A.SL1-1
KH2012:KH.C9.309.v1.A.SL2-1
External database links
1 result
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000014326 |
Gateway full ORF
2 results
cien108414
Plate: VES87_N06
cien84852
Plate: VES83_E16
Gene collection 1 (N. Satoh)
1 result
cieg042i11
Plate: R1CiGC22g10
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
6 results
GOSlim
12 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| chromatin binding | Blast | molecular function |
| RNA binding | Blast | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Blast | cellular component |
| cytosol | Blast | cellular component |
| membrane | Blast | cellular component |
| nuclear speck | Blast | cellular component |
| enzyme binding | Blast | molecular function |
| nuclear part | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
| nuclear lumen | Blast | cellular component |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
14 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| RNA polymerase II core binding | Hs | molecular function | 83.6 | 5.30e-17 |
| chromatin binding | Hs | molecular function | 83.6 | 5.30e-17 |
| RNA binding | Hs | molecular function | 43.9 | 1.84e-04 |
| protein binding | Hs | molecular function | 83.6 | 5.30e-17 |
| nucleus | Hs | cellular component | 83.6 | 5.30e-17 |
| nucleoplasm | Hs | cellular component | 83.6 | 5.30e-17 |
| spliceosomal complex | Hs | cellular component | 83.6 | 5.30e-17 |
| U1 snRNP | Hs | cellular component | 43.9 | 1.84e-04 |
| cytosol | Hs | cellular component | 41.2 | 0.001 |
| membrane | Hs | cellular component | 41.2 | 0.001 |
| nuclear matrix | Hs | cellular component | 41.2 | 0.001 |
| nuclear speck | Hs | cellular component | 83.6 | 5.30e-17 |
| proline-rich region binding | Hs | molecular function | 41.2 | 0.001 |
| U2-type prespliceosome | Hs | cellular component | 43.9 | 1.84e-04 |
GO (InterProScan)
1 result
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| protein binding | SUPERFAMILY | molecular function | 3.12E-9 |
