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GENE CARD

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Gene Card

Best human hits

HERC3; HERC6; RCCD1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009819

Gene Model ID

KH2012:KH.C9.287

Location

KhC9:4989034..4992490

Transcript Models and Sequences

  KH2012:KH.C9.287.v1.A.ND2-2
KH2012:KH.C9.287.v1.A.nonSL6-2
KH2012:KH.C9.287.v2.A.ND2-2
KH2012:KH.C9.287.v2.A.nonSL6-2
KH2012:KH.C9.287.v3.A.SL5-2
KH2012:KH.C9.287.v3.A.SL7-2
KH2012:KH.C9.287.v3.R.ND4-2
KH2012:KH.C9.287.v4.A.SL1-1
KH2012:KH.C9.287.v5.A.SL1-2
KH2012:KH.C9.287.v6.A.SL1-2
KH2012:KH.C9.287.v7.A.SL5-1
KH2012:KH.C9.287.v7.A.SL7-1
KH2012:KH.C9.287.v7.A.SL8-1
KH2012:KH.C9.287.v7.R.ND3-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000012962
NCBI Reference Sequence XM_002131946.3
NCBI Reference Sequence XM_018813414.1
Collections

Gateway full ORF

3 results

cien48379

Plate: VES77_P20

cien133046

Plate: VES91_O03

cien192752

Plate: VES100_H04

Gene collection 1 (N. Satoh)

1 result

cieg056p10

Plate: R1CiGC24n03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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No Phylogeny Tree for this Gene.
Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Reg_chr_condens ProSitePatterns Regulator of chromosome condensation, RCC1
Reg_chr_condens PRINTS Regulator of chromosome condensation, RCC1
Reg_chr_condens Pfam Regulator of chromosome condensation, RCC1
Reg_chr_condens ProSiteProfiles Regulator of chromosome condensation, RCC1
RCC1/BLIP-II SUPERFAMILY Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
RCC1/BLIP-II Gene3D Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II

GOSlim

8 results

GO Term Annotation Origin Type
ubiquitin-protein transferase activity Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
transferase activity Blast molecular function
cytoplasmic vesicle Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ubiquitin-protein transferase activity Hs molecular function 63.5 1.99e-11
nucleus Hs cellular component 63.5 1.99e-11
chromosome Hs cellular component 81.3 1.34e-17
cytoplasm Hs cellular component 63.5 1.99e-11
cytosol Hs cellular component 81.3 1.34e-17
plasma membrane Hs cellular component 81.3 1.34e-17
transferase activity Hs molecular function 63.5 1.99e-11
cytoplasmic vesicle Hs cellular component 60.5 2.75e-10
ubiquitin protein ligase activity Hs molecular function 63.5 1.99e-11

GO (InterProScan)

No result

GO Term Analysis Type e-value

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