Aniseed - Gene card

Gene Card

Best human hits

TNS1; TNS2; TNS3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009811

Gene Model ID

KH2012:KH.C9.28

Location

KhC9:4261799..4286626

Transcript Models and Sequences

KH2012:KH.C9.28.v1.A.nonSL9-1
KH2012:KH.C9.28.v1.A.SL1-1
KH2012:KH.C9.28.v2.A.ND2-1
KH2012:KH.C9.28.v3.A.SL10-1
KH2012:KH.C9.28.v3.A.SL6-1
KH2012:KH.C9.28.v3.A.SL7-1
KH2012:KH.C9.28.v3.A.SL8-1
KH2012:KH.C9.28.v3.R.ND4-1
KH2012:KH.C9.28.v4.A.SL5-1
KH2012:KH.C9.28.v5.A.SL3-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000012993

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

2 results

cilv002b21

Plate: R1CiGC25c01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

5 results

Ci-tensin 2942/6022 REG00000835 [ regulatory_region (extended_promoter) ]
- Ci-tensin 3545/6022 REG00000836 [ regulatory_region (extended_promoter) ]
  - Ci-tensin 3974/6022 REG00000837 [ regulatory_region (extended_promoter) ]
    - Ci-tensin 4620/6022 REG00000838 [ regulatory_region (extended_promoter) ]
      - Ci-tensin 5581/6022 REG00000839 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
SH2	ProSiteProfiles	SH2 domain
SH2_dom_sf	Gene3D	SH2 domain superfamily
PTB	Pfam	Tensin/EPS8 phosphotyrosine-binding domain
SH2_dom_sf	SUPERFAMILY	SH2 domain superfamily
Tensin_like_SH2	CDD	Tensin-like, SH2 domain
Tensin_PTB	CDD	Tensin, phosphotyrosine-binding domain
PTB/PI_dom	SMART	PTB/PI domain
PH-like_dom_sf	Gene3D	PH-like domain superfamily
SH2	Pfam	SH2 domain
SH2	SMART	SH2 domain

GOSlim

19 results

GO Term	Annotation Origin	Type
RNA binding	Blast	molecular function
actin binding	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
plasma membrane	Blast	cellular component
focal adhesion	Orthology	cellular component
protein dephosphorylation	Blast	biological process
cell surface	Blast	cellular component
membrane	Blast	cellular component
hydrolase activity	Blast	molecular function
kinase binding	Blast	molecular function
cell junction	Orthology	cellular component
cell-substrate junction	Blast	cellular component
metal ion binding	Blast	molecular function
apoptotic process	Orthology	biological process
protein localization	Orthology	biological process

GO (Orthology)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
actin binding	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
focal adhesion	Hs	cellular component
cell junction	Hs	cellular component
apoptotic process	Hs	biological process
protein localization	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	350	1.17e-100
actin binding	Hs	molecular function	350	1.17e-100
phosphoprotein phosphatase activity	Hs	molecular function	301	9.88e-85
protein binding	Hs	molecular function	350	1.17e-100
intracellular	Hs	cellular component	350	1.17e-100
cytoplasm	Hs	cellular component	350	1.17e-100
cytosol	Hs	cellular component	329	3.48e-94
cytoskeleton	Hs	cellular component	350	1.17e-100
plasma membrane	Hs	cellular component	301	9.88e-85
focal adhesion	Hs	cellular component	350	1.17e-100
cell surface	Hs	cellular component	350	1.17e-100
membrane	Hs	cellular component	301	9.88e-85
hydrolase activity	Hs	molecular function	301	9.88e-85
kinase binding	Hs	molecular function	301	9.88e-85
cell junction	Hs	cellular component	350	1.17e-100
cell-substrate junction	Hs	cellular component	350	1.17e-100
metal ion binding	Hs	molecular function	301	9.88e-85

GO (InterProScan)