Login
Help

GENE CARD

Submit your Data

  1. Gene 'KH2012:KH.C9.13'

Gene Card

Best human hits

TSFM

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009646

Gene Model ID

KH2012:KH.C9.13

Location

KhC9:3515473..3520894

Transcript Models and Sequences

  KH2012:KH.C9.13.v1.A.ND1-1
KH2012:KH.C9.13.v1.A.nonSL5-1
KH2012:KH.C9.13.v1.A.nonSL6-1
KH2012:KH.C9.13.v1.A.nonSL7-1
KH2012:KH.C9.13.v1.A.nonSL8-1
KH2012:KH.C9.13.v1.A.SL2-1
KH2012:KH.C9.13.v1.A.SL3-1
KH2012:KH.C9.13.v1.A.SL4-1
KH2012:KH.C9.13.v2.A.ND1-1
KH2012:KH.C9.13.v2.A.nonSL5-1
KH2012:KH.C9.13.v2.A.nonSL6-1
KH2012:KH.C9.13.v2.A.nonSL7-1
KH2012:KH.C9.13.v2.A.nonSL8-1
KH2012:KH.C9.13.v2.A.SL2-1
KH2012:KH.C9.13.v2.A.SL3-1
KH2012:KH.C9.13.v2.A.SL4-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001275
NCBI Reference Sequence XM_002129397.3
Collections

Gateway full ORF

2 results

cien108771

Plate: VES87_O07

cima864991

Plate: VES65_J16

Gene collection 1 (N. Satoh)

1 result

cieg021k18

Plate: R1CiGC18j24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Transl_elong_EFTs/EF1B Hamap Translation elongation factor EFTs/EF1B
EF-Ts_dimer_sf SUPERFAMILY Elongation factor Ts, dimerisation domain superfamily
Transl_elong_Ts_CS ProSitePatterns Translation elongation factor Ts, conserved site
EF-Ts_dimer_sf Gene3D Elongation factor Ts, dimerisation domain superfamily
Transl_elong_EFTs/EF1B PANTHER Translation elongation factor EFTs/EF1B
UBA-like_sf SUPERFAMILY UBA-like superfamily
Transl_elong_EFTs/EF1B_dimer Pfam Translation elongation factor EFTs/EF1B, dimerisation

GOSlim

8 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
mitochondrion Orthology cellular component
mitochondrial matrix Orthology cellular component
regulation of gene expression Orthology biological process
regulation of transcription, DNA-templated Orthology biological process

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA binding Hs molecular function
translation elongation factor activity Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
translation Hs biological process
translational elongation Hs biological process
regulation of DNA-templated transcription, elongation Hs biological process
mitochondrial translational elongation Hs biological process
regulation of mitochondrial translation Hs biological process

GO (Blast)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 148 7.53e-42
translation elongation factor activity Hs molecular function 148 7.53e-42
protein binding Hs molecular function 148 7.53e-42
intracellular Hs cellular component 148 7.53e-42
nucleus Hs cellular component 148 7.53e-42
mitochondrion Hs cellular component 148 7.53e-42
mitochondrial matrix Hs cellular component 148 7.53e-42

GO (InterProScan)

4 results

GO Term Analysis Type e-value
translation elongation factor activity PANTHER molecular function 6.1E-73
protein binding SUPERFAMILY molecular function 3.32E-7
intracellular PANTHER cellular component 6.1E-73
translational elongation PANTHER biological process 6.1E-73

Back to Top