Login
Help

GENE CARD

Submit your Data

  1. Gene 'KH2012:KH.C8.890'

Gene Card

Best human hits

FOXD1; FOXD3; FOXD4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009568

Gene Model ID

KH2012:KH.C8.890

Location

KhC8:2631041..2633064

Transcript Models and Sequences

  KH2012:KH.C8.890.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000003394
Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

2 results

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Fork_head_dom ProSiteProfiles Fork head domain
Fork_head_dom Pfam Fork head domain
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2
Fork_head_dom CDD Fork head domain
Fork_head_dom PRINTS Fork head domain
Fork_head_dom SMART Fork head domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily

GOSlim

17 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Blast biological process
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
anatomical structure morphogenesis Orthology biological process
cell differentiation Orthology biological process
sequence-specific DNA binding Orthology molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
DNA binding, bending Hs molecular function
anatomical structure morphogenesis Hs biological process
cell differentiation Hs biological process
sequence-specific DNA binding Hs molecular function

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 202 9.08e-59
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 202 9.08e-59
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 183 8.96e-52
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 202 9.08e-59
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 183 8.96e-52
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 202 9.08e-59
DNA binding Hs molecular function 202 9.08e-59
transcription factor activity, sequence-specific DNA binding Hs molecular function 202 9.08e-59
protein binding Hs molecular function 202 9.08e-59
nucleus Hs cellular component 202 9.08e-59
nucleoplasm Hs cellular component 202 9.08e-59
DNA binding, bending Hs molecular function 200 3.09e-58
sequence-specific DNA binding Hs molecular function 202 9.08e-59

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 1.9E-60
regulation of transcription, DNA-templated SMART biological process 1.9E-60
sequence-specific DNA binding SMART molecular function 1.9E-60

Back to Top