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GENE CARD

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  1. Gene 'KH2012:KH.C8.562'

Gene Card

Best human hits

NEDD8; UBTD1; UBTD2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009208

Gene Model ID

KH2012:KH.C8.562

Location

KhC8:1773620..1777962

Transcript Models and Sequences

  KH2012:KH.C8.562.v1.A.SL1-1
KH2012:KH.C8.562.v1.A.SL2-1
KH2012:KH.C8.562.v1.A.SL3-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000006789
Collections

Gateway full ORF

2 results

cien35415

Plate: VES75_H24

cima821794

Plate: VES60_D05

Gene collection 1 (N. Satoh)

1 result

cieg023p11

Plate: R1CiGC19g08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Ubiquitin PRINTS Ubiquitin
UBD Pfam Ubiquitin-binding domain
Ubiquitin-like_domsf SUPERFAMILY Ubiquitin-like domain superfamily
UBD_sf Gene3D Ubiquitin-binding domain superfamily
Ubiquitin_dom ProSiteProfiles Ubiquitin domain
Ubiquitin_dom Pfam Ubiquitin domain
Ubiquitin_dom SMART Ubiquitin domain

GOSlim

7 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
cytosol Blast cellular component
ubiquitin protein ligase binding Blast molecular function
extracellular exosome Blast cellular component

GO (Orthology)

3 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
protein binding Hs molecular function
cytoplasm Hs cellular component
ubiquitin binding Hs molecular function

GO (Blast)

8 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protein binding Hs molecular function 239 2.92e-80
nucleus Hs cellular component 47.0 2.44e-07
nucleoplasm Hs cellular component 47.0 2.44e-07
cytoplasm Hs cellular component 239 2.92e-80
cytosol Hs cellular component 47.0 2.44e-07
ubiquitin protein ligase binding Hs molecular function 47.0 2.44e-07
ubiquitin binding Hs molecular function 239 2.92e-80
extracellular exosome Hs cellular component 47.0 2.44e-07

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.1E-15
ubiquitin binding Pfam molecular function 5.3E-37

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