Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 
  3. > 

Gene Card

Best human hits

GTSF1; GTSF1L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008997

Gene Model ID

KH2012:KH.C8.370

Location

KhC8:1552589..1556513

Transcript Models and Sequences

  KH2012:KH.C8.370.v1.A.nonSL2-1
KH2012:KH.C8.370.v1.A.nonSL3-1
KH2012:KH.C8.370.v1.A.nonSL4-1
KH2012:KH.C8.370.v1.A.nonSL5-1
KH2012:KH.C8.370.v1.A.nonSL6-1
KH2012:KH.C8.370.v1.A.nonSL7-1
KH2012:KH.C8.370.v1.A.nonSL8-1
KH2012:KH.C8.370.v1.R.ND1-1
KH2012:KH.C8.370.v2.A.nonSL2-1
KH2012:KH.C8.370.v2.A.nonSL3-1
KH2012:KH.C8.370.v2.A.nonSL4-1
KH2012:KH.C8.370.v2.A.nonSL5-1
KH2012:KH.C8.370.v2.A.nonSL6-1
KH2012:KH.C8.370.v2.A.nonSL7-1
KH2012:KH.C8.370.v2.A.nonSL8-1
KH2012:KH.C8.370.v2.R.ND1-1

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000015663
NCBI Reference Sequence XM_002126160.4
NCBI Reference Sequence XR_001974864.1
NCBI Reference Sequence XR_717332.2
NCBI Reference Sequence XR_717333.2
Collections

Gateway full ORF

2 results

cien48847

Plate: VES77_A23

cien94908

Plate: VES85_B06

Gene collection 1 (N. Satoh)

1 result

cicl048b19

Plate: R1CiGC13f17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
TRM13/UPF0224_CHHC_Znf_dom ProSiteProfiles TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
TRM13/UPF0224_CHHC_Znf_dom Pfam TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain

GOSlim

2 results

GO Term Annotation Origin Type
cytoplasm Blast cellular component
metal ion binding Orthology molecular function

GO (Orthology)

1 result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
metal ion binding Hs molecular function

GO (Blast)

2 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
cytoplasm Hs cellular component 74.7 2.64e-16
metal ion binding Hs molecular function 74.7 2.64e-16

GO (InterProScan)

No result

GO Term Analysis Type e-value

Back to Top