Aniseed - Gene card

Gene Card

Best human hits

RPS20

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008930

Gene Model ID

KH2012:KH.C8.308

Location

KhC8:5021478..5022376

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000000852
NCBI Reference Sequence	XM_002129827.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl044j13

Plate: R1CiGC13a19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Ribosomal_S10_dom_sf	SUPERFAMILY	Ribosomal protein S10 domain superfamily
Ribosomal_S10	Hamap	Ribosomal protein S10
Ribosomal_S10_dom	SMART	Ribosomal protein S10 domain
Ribosomal_S10	PANTHER	Ribosomal protein S10
Ribosomal_S10	PRINTS	Ribosomal protein S10
Ribosomal_S10_dom_sf	Gene3D	Ribosomal protein S10 domain superfamily
Ribosomal_S10_euk/arc	TIGRFAM	Ribosomal protein S10, eukaryotic/archaeal
Ribosomal_S10_dom	Pfam	Ribosomal protein S10 domain

GOSlim

15 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
extracellular exosome	Hs	cellular component

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	193	5.12e-65
structural constituent of ribosome	Hs	molecular function	193	5.12e-65
protein binding	Hs	molecular function	193	5.12e-65
intracellular	Hs	cellular component	193	5.12e-65
nucleoplasm	Hs	cellular component	193	5.12e-65
cytoplasm	Hs	cellular component	193	5.12e-65
cytosol	Hs	cellular component	193	5.12e-65
ribosome	Hs	cellular component	193	5.12e-65
small ribosomal subunit	Hs	cellular component	193	5.12e-65
membrane	Hs	cellular component	193	5.12e-65
cytosolic small ribosomal subunit	Hs	cellular component	193	5.12e-65
intracellular ribonucleoprotein complex	Hs	cellular component	193	5.12e-65
extracellular exosome	Hs	cellular component	193	5.12e-65

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	1.9E-62
ribosome	PANTHER	cellular component	1.9E-62
translation	PANTHER	biological process	1.9E-62
small ribosomal subunit	TIGRFAM	cellular component	9.5E-45