Aniseed - Gene card

Gene Card

Best human hits

COL19A1; COL21A1; COL24A1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008866

Gene Model ID

KH2012:KH.C8.248

Location

KhC8:5996820..6014996

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018860
ENSEMBL	ENSCING00000020156

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cilv014e05

Plate: R1CiGC26k11

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Collagen	Pfam	Collagen triple helix repeat
Laminin_G	SMART	Laminin G domain
ConA-like_dom_sf	SUPERFAMILY	Concanavalin A-like lectin/glucanase domain superfamily

GOSlim

14 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
extracellular region	Orthology	cellular component
cytoplasm	Blast	cellular component
endoplasmic reticulum lumen	Orthology	cellular component
cytosol	Blast	cellular component
extracellular matrix organization	Orthology	biological process
metal ion binding	Orthology	molecular function
system development	Orthology	biological process
macromolecular complex	Orthology	cellular component
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
structural molecule activity	Orthology	molecular function
extracellular region part	Orthology	cellular component

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
skeletal system development	Hs	biological process
extracellular region	Hs	cellular component
proteinaceous extracellular matrix	Hs	cellular component
collagen trimer	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
extracellular matrix organization	Hs	biological process
collagen type IX trimer	Hs	cellular component
male gonad development	Hs	biological process
female gonad development	Hs	biological process
animal organ morphogenesis	Hs	biological process
extracellular matrix structural constituent conferring tensile strength	Hs	molecular function
metal ion binding	Hs	molecular function

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
extracellular matrix structural constituent	Hs	molecular function	204	9.23e-55
protein binding	Hs	molecular function	191	4.13e-50
extracellular region	Hs	cellular component	263	1.22e-75
proteinaceous extracellular matrix	Hs	cellular component	263	1.22e-75
collagen trimer	Hs	cellular component	263	1.22e-75
cytoplasm	Hs	cellular component	263	1.22e-75
endoplasmic reticulum lumen	Hs	cellular component	263	1.22e-75
cytosol	Hs	cellular component	263	1.22e-75
protein binding, bridging	Hs	molecular function	204	9.23e-55
extracellular matrix	Hs	cellular component	263	1.22e-75

GO (InterProScan)