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GENE CARD

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Gene Card

Best human hits

ELK1; ELK3; ELK4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008865

Gene Model ID

KH2012:KH.C8.247

Location

KhC8:2395167..2409733

Transcript Models and Sequences

  KH2012:KH.C8.247.v1.A.SL1-1
KH2012:KH.C8.247.v2.A.SL2-1
KH2012:KH.C8.247.v2.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000002179
NCBI Reference Sequence NM_001122967.1
Collections

Gateway full ORF

2 results

cien77685

Plate: VES82_K12

cien78748

Plate: VES82_O16

Gene collection 1 (N. Satoh)

2 results

cicl006n02

Plate: R1CiGC09c11

cilv026m05

Plate: R1CiGC27g08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Ets_dom PRINTS Ets domain
Ets_dom SMART Ets domain
Ets_dom ProSiteProfiles Ets domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Ets_dom ProSitePatterns Ets domain
Ets_dom Pfam Ets domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily

GOSlim

36 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
angiogenesis Orthology biological process
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
double-stranded DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription cofactor activity Orthology molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
signal transduction Orthology biological process
cell differentiation Orthology biological process
wound healing Orthology biological process
neuronal cell body Orthology cellular component
sequence-specific DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription regulatory region DNA binding Orthology molecular function
transcription factor binding Orthology molecular function
sequence-specific double-stranded DNA binding Orthology molecular function
cell projection part Orthology cellular component
axon Orthology cellular component
synapse part Orthology cellular component
organelle organization Orthology biological process
cellular protein modification process Orthology biological process
positive regulation of cell death Orthology biological process

GO (Orthology)

37 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
core promoter binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
RNA polymerase II transcription factor binding Hs molecular function
angiogenesis Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
double-stranded DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription cofactor activity Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
signal transduction Hs biological process
response to light stimulus Hs biological process
cell differentiation Hs biological process
dendrite Hs cellular component
purine-rich negative regulatory element binding Hs molecular function
wound healing Hs biological process
neuronal cell body Hs cellular component
sequence-specific DNA binding Hs molecular function
axon terminus Hs cellular component
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
histone H3 deacetylation Hs biological process
cellular response to gamma radiation Hs biological process
positive regulation of neuron death Hs biological process

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 162 4.68e-43
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 162 4.68e-43
core promoter binding Hs molecular function 139 2.59e-35
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 162 4.68e-43
RNA polymerase II transcription factor binding Hs molecular function 162 4.68e-43
DNA binding Hs molecular function 162 4.68e-43
chromatin binding Hs molecular function 162 4.68e-43
double-stranded DNA binding Hs molecular function 162 4.68e-43
transcription factor activity, sequence-specific DNA binding Hs molecular function 162 4.68e-43
transcription cofactor activity Hs molecular function 139 2.59e-35
transcription corepressor activity Hs molecular function 143 1.01e-36
protein binding Hs molecular function 162 4.68e-43
nucleus Hs cellular component 162 4.68e-43
nucleoplasm Hs cellular component 162 4.68e-43
cytoplasm Hs cellular component 162 4.68e-43
mitochondrion Hs cellular component 162 4.68e-43
cytosol Hs cellular component 139 2.59e-35
dendrite Hs cellular component 162 4.68e-43
purine-rich negative regulatory element binding Hs molecular function 143 1.01e-36
neuronal cell body Hs cellular component 162 4.68e-43
sequence-specific DNA binding Hs molecular function 162 4.68e-43
axon terminus Hs cellular component 162 4.68e-43

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 3.9E-55
regulation of transcription, DNA-templated SMART biological process 3.9E-55
sequence-specific DNA binding SMART molecular function 3.9E-55

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