Gene Card
Best human hits
CHERP; SF3A1; SUGP1
Unique Gene ID
Cirobu.g00008864
Gene Model ID
KH2012:KH.C8.246
Location
KhC8:521672..528980
Transcript Models and Sequences
KH2012:KH.C8.246.v1.A.SL1-1
KH2012:KH.C8.246.v1.A.SL2-1
KH2012:KH.C8.246.v2.A.SL1-2
KH2012:KH.C8.246.v2.A.SL2-2
External database links
2 results
| Database | Gene ID |
|---|---|
| NCBI Reference Sequence | XM_002126273.3 |
| NCBI Reference Sequence | XM_009860917.2 |
Gateway full ORF
2 results
cien203184
Plate: VES101_P21
cien222602
Plate: VES104_H17
Gene collection 1 (N. Satoh)
2 results
cieg056o22
Plate: R1CiGC24l15
cicl029l03
Plate: R1CiGC12k05
n/a
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Click here to see the tree inference method
InterPro
12 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Surp | ProSiteProfiles | SWAP/Surp |
| SWAP/Surp_sf | Gene3D | SWAP/Surp superfamily |
| SWAP/Surp_sf | SUPERFAMILY | SWAP/Surp superfamily |
| Surp | SMART | SWAP/Surp |
| Surp | Pfam | SWAP/Surp |
| G_patch_dom | SMART | G-patch domain |
| ENTH_VHS | SUPERFAMILY | ENTH/VHS |
| G_patch_dom | Pfam | G-patch domain |
| G_patch_dom | ProSiteProfiles | G-patch domain |
| CID_dom | ProSiteProfiles | CID domain |
| RNA_pol_II-bd | Pfam | RNA polymerase II-binding domain |
| ENTH_VHS | Gene3D | ENTH/VHS |
GOSlim
22 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| nucleic acid binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| endoplasmic reticulum | Orthology | cellular component |
| RNA processing | Orthology | biological process |
| nervous system development | Orthology | biological process |
| negative regulation of cell proliferation | Orthology | biological process |
| membrane | Orthology | cellular component |
| nuclear speck | Blast | cellular component |
| perinuclear region of cytoplasm | Orthology | cellular component |
| cellular process | Orthology | biological process |
| cell | Orthology | cellular component |
| endoplasmic reticulum membrane | Orthology | cellular component |
| bounding membrane of organelle | Orthology | cellular component |
| transmembrane transport | Orthology | biological process |
| metal ion transport | Orthology | biological process |
| nuclear part | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
GO (Orthology)
17 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| mRNA splicing, via spliceosome | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleoplasm | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| endoplasmic reticulum | Hs | cellular component |
| RNA processing | Hs | biological process |
| cellular calcium ion homeostasis | Hs | biological process |
| nervous system development | Hs | biological process |
| negative regulation of cell proliferation | Hs | biological process |
| membrane | Hs | cellular component |
| sarcoplasmic reticulum membrane | Hs | cellular component |
| ion channel binding | Hs | molecular function |
| perinuclear region of cytoplasm | Hs | cellular component |
| release of sequestered calcium ion into cytosol | Hs | biological process |
| positive regulation of NFAT protein import into nucleus | Hs | biological process |
GO (Blast)
17 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 145 | 1.05e-35 |
| RNA binding | Hs | molecular function | 145 | 1.05e-35 |
| protein binding | Hs | molecular function | 145 | 1.05e-35 |
| nucleus | Hs | cellular component | 58.2 | 1.40e-08 |
| nucleoplasm | Hs | cellular component | 145 | 1.05e-35 |
| spliceosomal complex | Hs | cellular component | 58.2 | 1.40e-08 |
| U2-type spliceosomal complex | Hs | cellular component | 58.2 | 1.40e-08 |
| U2 snRNP | Hs | cellular component | 58.2 | 1.40e-08 |
| cytoplasm | Hs | cellular component | 145 | 1.05e-35 |
| endoplasmic reticulum | Hs | cellular component | 145 | 1.05e-35 |
| membrane | Hs | cellular component | 145 | 1.05e-35 |
| nuclear speck | Hs | cellular component | 58.2 | 1.40e-08 |
| sarcoplasmic reticulum membrane | Hs | cellular component | 145 | 1.05e-35 |
| ion channel binding | Hs | molecular function | 145 | 1.05e-35 |
| perinuclear region of cytoplasm | Hs | cellular component | 145 | 1.05e-35 |
| U2-type prespliceosome | Hs | cellular component | 58.2 | 1.40e-08 |
| catalytic step 2 spliceosome | Hs | cellular component | 58.2 | 1.40e-08 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SMART | molecular function | 2.6E-12 |
| RNA binding | Gene3D | molecular function | 3.8E-24 |
| RNA processing | Gene3D | biological process | 3.8E-24 |
