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Gene Card

Best human hits

PPARA; PPARD; PPARG

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008750

Gene Model ID

KH2012:KH.C8.143

Location

KhC8:4421573..4441979

Transcript Models and Sequences

  KH2012:KH.C8.143.v1.A.SL1-2
KH2012:KH.C8.143.v1.A.SL3-2
KH2012:KH.C8.143.v1.A.SL4-2
KH2012:KH.C8.143.v1.A.SL5-2
KH2012:KH.C8.143.v2.A.ND2-2
KH2012:KH.C8.143.v3.A.SL1-2
KH2012:KH.C8.143.v3.A.SL3-2
KH2012:KH.C8.143.v3.A.SL4-2
KH2012:KH.C8.143.v3.A.SL5-2
KH2012:KH.C8.143.v4.A.SL1-2
KH2012:KH.C8.143.v4.A.SL3-2
KH2012:KH.C8.143.v4.A.SL4-2
KH2012:KH.C8.143.v4.A.SL5-2
KH2012:KH.C8.143.v5.A.SL1-1
KH2012:KH.C8.143.v5.A.SL3-1
KH2012:KH.C8.143.v5.A.SL4-1
KH2012:KH.C8.143.v5.A.SL5-1

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000013188
NCBI Reference Sequence NM_001078333.1
NCBI Reference Sequence XM_018812720.1
NCBI Reference Sequence XM_018812721.1
NCBI Reference Sequence XM_018812722.1
Collections

Gateway full ORF

2 results

cien115801

Plate: VES88_C10

cien130430

Plate: VES90_P17

Gene collection 1 (N. Satoh)

1 result

citb037p19

Plate: R1CiGC32b09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
Nucl_hrmn_rcpt_lig-bd SMART Nuclear hormone receptor, ligand-binding domain
Nucl_hrmn_rcpt_lig-bd Pfam Nuclear hormone receptor, ligand-binding domain
ThyrH_rcpt PRINTS Thyroid hormone receptor
Nuclear_hrmn_rcpt PRINTS Nuclear hormone receptor
NHR_like_dom_sf SUPERFAMILY Nuclear hormone receptor-like domain superfamily
Znf_hrmn_rcpt ProSitePatterns Zinc finger, nuclear hormone receptor-type
Znf_NHR/GATA Gene3D Zinc finger, NHR/GATA-type
Znf_hrmn_rcpt ProSiteProfiles Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt SMART Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt PRINTS Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt Pfam Zinc finger, nuclear hormone receptor-type

GOSlim

40 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Blast biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
double-stranded DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
signal transduction Blast biological process
protein C-terminus binding Blast molecular function
transcription factor binding Blast molecular function
zinc ion binding Blast molecular function
enzyme binding Blast molecular function
macromolecular complex Blast cellular component
response to lipid Blast biological process
identical protein binding Blast molecular function
intracellular membrane-bounded organelle Blast cellular component
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
metal ion binding Blast molecular function
protein heterodimerization activity Blast molecular function
perinuclear region of cytoplasm Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
transcription regulatory region sequence-specific DNA binding Blast molecular function
signaling receptor activity Blast molecular function
cellular response to organic substance Blast biological process
G-protein coupled receptor activity Blast molecular function
small molecule binding Blast molecular function
anion binding Blast molecular function
binding Blast molecular function
receptor binding Blast molecular function
cytoskeletal protein binding Blast molecular function
nuclear part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

58 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 162 7.59e-44
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 153 2.14e-40
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 162 7.59e-44
core promoter sequence-specific DNA binding Hs molecular function 158 6.77e-42
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 153 2.14e-40
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 153 2.14e-40
RNA polymerase II repressing transcription factor binding Hs molecular function 153 2.14e-40
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 153 2.14e-40
transcription coactivator binding Hs molecular function 153 2.14e-40
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 162 7.59e-44
DNA binding Hs molecular function 162 7.59e-44
chromatin binding Hs molecular function 158 6.77e-42
double-stranded DNA binding Hs molecular function 158 6.77e-42
transcription factor activity, sequence-specific DNA binding Hs molecular function 162 7.59e-44
steroid hormone receptor activity Hs molecular function 162 7.59e-44
transcription coactivator activity Hs molecular function 162 7.59e-44
receptor activity Hs molecular function 153 2.14e-40
nuclear receptor activity Hs molecular function 162 7.59e-44
prostaglandin receptor activity Hs molecular function 158 6.77e-42
fatty acid binding Hs molecular function 162 7.59e-44
protein binding Hs molecular function 162 7.59e-44
nucleus Hs cellular component 162 7.59e-44
nucleoplasm Hs cellular component 162 7.59e-44
cytoplasm Hs cellular component 158 6.77e-42
cytosol Hs cellular component 158 6.77e-42
protein C-terminus binding Hs molecular function 158 6.77e-42
transcription factor binding Hs molecular function 162 7.59e-44
drug binding Hs molecular function 162 7.59e-44
zinc ion binding Hs molecular function 162 7.59e-44
lipid binding Hs molecular function 162 7.59e-44
enzyme binding Hs molecular function 158 6.77e-42
phosphatase binding Hs molecular function 153 2.14e-40
protein phosphatase binding Hs molecular function 158 6.77e-42
protein domain specific binding Hs molecular function 153 2.14e-40
estrogen receptor binding Hs molecular function 158 6.77e-42
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function 158 6.77e-42
ubiquitin conjugating enzyme binding Hs molecular function 153 2.14e-40
macromolecular complex Hs cellular component 158 6.77e-42
activating transcription factor binding Hs molecular function 158 6.77e-42
peptide binding Hs molecular function 158 6.77e-42
identical protein binding Hs molecular function 158 6.77e-42
intracellular membrane-bounded organelle Hs cellular component 158 6.77e-42
sequence-specific DNA binding Hs molecular function 162 7.59e-44
protein self-association Hs molecular function 158 6.77e-42
transcription regulatory region DNA binding Hs molecular function 158 6.77e-42
metal ion binding Hs molecular function 162 7.59e-44
retinoid X receptor binding Hs molecular function 158 6.77e-42
protein heterodimerization activity Hs molecular function 162 7.59e-44
perinuclear region of cytoplasm Hs cellular component 158 6.77e-42
arachidonic acid binding Hs molecular function 158 6.77e-42
DBD domain binding Hs molecular function 158 6.77e-42
LBD domain binding Hs molecular function 158 6.77e-42
NF-kappaB binding Hs molecular function 162 7.59e-44
alpha-actinin binding Hs molecular function 158 6.77e-42
NFAT protein binding Hs molecular function 153 2.14e-40
linoleic acid binding Hs molecular function 162 7.59e-44
RNA polymerase II transcription factor complex Hs cellular component 158 6.77e-42
MDM2/MDM4 family protein binding Hs molecular function 153 2.14e-40

GO (InterProScan)

9 results

GO Term Analysis Type e-value
DNA binding PRINTS molecular function 3.9E-20
transcription factor activity, sequence-specific DNA binding SMART molecular function 2.6E-33
steroid hormone receptor activity PRINTS molecular function 3.9E-20
nucleus PRINTS cellular component 1.6E-16
regulation of transcription, DNA-templated SMART biological process 2.6E-33
zinc ion binding SMART molecular function 2.6E-33
steroid hormone mediated signaling pathway Pfam biological process 6.0E-9
sequence-specific DNA binding SMART molecular function 2.6E-33
thyroid hormone receptor activity PRINTS molecular function 9.1E-7

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