Aniseed - Gene card

Gene Card

Best human hits

SH3RF2; SH3RF3; SORBS1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008691

Gene Model ID

KH2012:KH.C7.90

Location

KhC7:5696246..5719737

Transcript Models and Sequences

KH2012:KH.C7.90.v1.A.SL7-1
KH2012:KH.C7.90.v1.R.ND1-1
KH2012:KH.C7.90.v2.A.SL3-1
KH2012:KH.C7.90.v3.A.SL3-1
KH2012:KH.C7.90.v4.A.SL5-1
KH2012:KH.C7.90.v5.A.SL2-1
KH2012:KH.C7.90.v5.A.SL6-1
KH2012:KH.C7.90.v6.R.ND4-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000011825

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

4 results

citb088d22

Plate: R1CiGC46n03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Sorbin_SH3	PANTHER	Sorbin and SH3 domain-containing protein
SH3-like_dom_sf	SUPERFAMILY	SH3-like domain superfamily
SH3_domain	SMART	SH3 domain
SH3_domain	PRINTS	SH3 domain
SH3_domain	ProSiteProfiles	SH3 domain
SH3_domain	Pfam	SH3 domain
SoHo_dom	ProSiteProfiles	SoHo domain
SoHo_dom	SMART	SoHo domain
SoHo_dom	Pfam	SoHo domain

GOSlim

35 results

GO Term	Annotation Origin	Type
actin binding	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
centrosome	Blast	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
plasma membrane	Blast	cellular component
adherens junction	Blast	cellular component
cell-substrate adherens junction	Blast	cellular component
focal adhesion	Orthology	cellular component
cytoskeletal protein binding	Orthology	molecular function
positive regulation of signal transduction	Orthology	biological process
membrane	Blast	cellular component
transferase activity	Blast	molecular function
cell junction	Orthology	cellular component
membrane raft	Blast	cellular component
metal ion binding	Blast	molecular function
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
cell adhesion	Orthology	biological process
transcription factor binding	Orthology	molecular function
organelle organization	Orthology	biological process
structural molecule activity	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
protein phosphorylation	Orthology	biological process
cytoskeletal part	Blast	cellular component
protein dephosphorylation	Blast	biological process
enzyme regulator activity	Blast	molecular function
enzyme binding	Blast	molecular function
receptor binding	Blast	molecular function
macromolecular complex binding	Blast	molecular function
integral component of plasma membrane	Blast	cellular component
macromolecular complex	Blast	cellular component
nuclear lumen	Blast	cellular component

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
focal adhesion	Hs	cellular component
muscle contraction	Hs	biological process
actin filament organization	Hs	biological process
cell junction	Hs	cellular component
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
structural constituent of cytoskeleton	Hs	molecular function
cell adhesion	Hs	biological process
transcription factor binding	Hs	molecular function
vinculin binding	Hs	molecular function
cell-substrate adhesion	Hs	biological process
positive regulation of MAPK cascade	Hs	biological process
positive regulation of cytoskeleton organization	Hs	biological process
positive regulation of stress fiber assembly	Hs	biological process

GO (Blast)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
stress fiber	Hs	cellular component	116	2.72e-26
actin binding	Hs	molecular function	116	2.72e-26
protein phosphatase inhibitor activity	Hs	molecular function	114	9.17e-26
SH3/SH2 adaptor activity	Hs	molecular function	116	2.72e-26
insulin receptor binding	Hs	molecular function	116	2.72e-26
protein binding	Hs	molecular function	129	2.77e-30
nucleus	Hs	cellular component	116	2.72e-26
nucleoplasm	Hs	cellular component	114	9.17e-26
cytoplasm	Hs	cellular component	116	2.72e-26
centrosome	Hs	cellular component	116	2.72e-26
cytosol	Hs	cellular component	116	2.72e-26
cytoskeleton	Hs	cellular component	116	2.72e-26
plasma membrane	Hs	cellular component	116	2.72e-26
insulin receptor complex	Hs	cellular component	116	2.72e-26
adherens junction	Hs	cellular component	116	2.72e-26
cell-cell adherens junction	Hs	cellular component	116	2.72e-26
zonula adherens	Hs	cellular component	116	2.72e-26
cell-substrate adherens junction	Hs	cellular component	116	2.72e-26
focal adhesion	Hs	cellular component	116	2.72e-26
cytoskeletal protein binding	Hs	molecular function	116	2.72e-26
protein phosphatase 1 binding	Hs	molecular function	114	9.17e-26
membrane	Hs	cellular component	116	2.72e-26
nuclear matrix	Hs	cellular component	116	2.72e-26
transferase activity	Hs	molecular function	114	9.17e-26
phosphatase binding	Hs	molecular function	114	9.17e-26
cell junction	Hs	cellular component	116	2.72e-26
membrane raft	Hs	cellular component	116	2.72e-26
metal ion binding	Hs	molecular function	129	2.77e-30

GO (InterProScan)