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Gene Card

Best human hits

RYBP; YAF2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008599

Gene Model ID

KH2012:KH.C7.724

Location

KhC7:4965245..4966681

Transcript Models and Sequences

  KH2012:KH.C7.724.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000019824
Collections

Gateway full ORF

2 results

cien68452

Plate: VES80_C24

cien93408

Plate: VES84_C24

Gene collection 1 (N. Satoh)

2 results

cicl054e06

Plate: R1CiGC14k14

ciad025a03

Plate: R1CiGC03c10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Znf_RanBP2 ProSiteProfiles Zinc finger, RanBP2-type
Znf_RanBP2 SMART Zinc finger, RanBP2-type
Znf_RanBP2 ProSitePatterns Zinc finger, RanBP2-type
Znf_RanBP2_sf SUPERFAMILY Zinc finger, RanBP2-type superfamily
Znf_RanBP2 Pfam Zinc finger, RanBP2-type
YAF2_RYBP Pfam Yaf2/RYBP C-terminal binding motif

GOSlim

24 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
apoptotic process Orthology biological process
multicellular organism development Orthology biological process
positive regulation of apoptotic process Orthology biological process
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
metal ion binding Orthology molecular function
regulation of nucleic acid-templated transcription Orthology biological process
negative regulation of nucleic acid-templated transcription Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
proteolysis Orthology biological process
organelle organization Orthology biological process
protein ubiquitination Orthology biological process

GO (Orthology)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
apoptotic process Hs biological process
multicellular organism development Hs biological process
PcG protein complex Hs cellular component
negative regulation of proteasomal ubiquitin-dependent protein catabolic process Hs biological process
histone H2A monoubiquitination Hs biological process
positive regulation of apoptotic process Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
metal ion binding Hs molecular function
regulation of nucleic acid-templated transcription Hs biological process
negative regulation of nucleic acid-templated transcription Hs biological process

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
DNA binding Hs molecular function 77.8 7.25e-18
transcription coactivator activity Hs molecular function 84.0 5.62e-21
transcription corepressor activity Hs molecular function 84.0 5.62e-21
protein binding Hs molecular function 84.0 5.62e-21
nucleus Hs cellular component 84.0 5.62e-21
nucleoplasm Hs cellular component 84.0 5.62e-21
cytoplasm Hs cellular component 77.8 7.25e-18
cytosol Hs cellular component 84.0 5.62e-21
PcG protein complex Hs cellular component 77.8 7.25e-18
metal ion binding Hs molecular function 84.0 5.62e-21

GO (InterProScan)

No result

GO Term Analysis Type e-value

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