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Gene Card

Best human hits

COL1A1; COL1A2; COL2A1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008499

Gene Model ID

KH2012:KH.C7.633

Location

KhC7:1095563..1117280

Transcript Models and Sequences

  KH2012:KH.C7.633.v1.A.ND1-1
KH2012:KH.C7.633.v1.A.nonSL2-1
KH2012:KH.C7.633.v1.A.nonSL3-1
KH2012:KH.C7.633.v1.A.nonSL4-1
KH2012:KH.C7.633.v2.A.ND1-1
KH2012:KH.C7.633.v2.A.nonSL2-1
KH2012:KH.C7.633.v2.A.nonSL3-1
KH2012:KH.C7.633.v2.A.nonSL4-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000006961
NCBI Reference Sequence NM_001033832.1
NCBI Reference Sequence XM_018812339.1
Collections

Gateway full ORF

2 results

cima818571

Plate: VES59_G12

cima899484

Plate: VES72_E15

Gene collection 1 (N. Satoh)

4 results

ciad027g14

Plate: R1CiGC03b01

ciad001j05

Plate: R1CiGC01e23

cilv002e01

Plate: R1CiGC25c05

ciad075l13

Plate: R1CiGC07b23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Fib_collagen_C ProDom Fibrillar collagen, C-terminal
Fib_collagen_C Pfam Fibrillar collagen, C-terminal
Collagen Pfam Collagen triple helix repeat
Fib_collagen_C ProSiteProfiles Fibrillar collagen, C-terminal
Fib_collagen_C SMART Fibrillar collagen, C-terminal

GOSlim

65 results

GO Term Annotation Origin Type
blood vessel development Orthology biological process
protein binding Orthology molecular function
extracellular region Orthology cellular component
extracellular space Orthology cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum Orthology cellular component
endoplasmic reticulum lumen Orthology cellular component
Golgi apparatus Orthology cellular component
central nervous system development Orthology biological process
blood coagulation Orthology biological process
visual perception Orthology biological process
sensory perception of sound Orthology biological process
regulation of gene expression Orthology biological process
protein transport Orthology biological process
cytokine-mediated signaling pathway Orthology biological process
extracellular matrix organization Orthology biological process
wound healing Orthology biological process
identical protein binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
metal ion binding Orthology molecular function
extracellular exosome Orthology cellular component
positive regulation of canonical Wnt signaling pathway Orthology biological process
integrin binding Orthology molecular function
heart development Orthology biological process
response to cytokine Orthology biological process
system development Orthology biological process
animal organ development Orthology biological process
anatomical structure morphogenesis Orthology biological process
cell differentiation Orthology biological process
enzyme binding Orthology molecular function
extracellular region part Orthology cellular component
structural molecule activity Orthology molecular function
macromolecular complex Orthology cellular component
protein metabolic process Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
small GTPase mediated signal transduction Orthology biological process
cytoplasmic vesicle Orthology cellular component
endomembrane system Orthology cellular component
cellular process Orthology biological process
cell migration Orthology biological process
catabolic process Orthology biological process
response to lipid Orthology biological process
biosynthetic process Orthology biological process
protein localization to organelle Orthology biological process
multicellular organism development Orthology biological process
receptor binding Orthology molecular function
response to oxidative stress Orthology biological process
response to organic substance Orthology biological process
immune response Orthology biological process
immune system process Orthology biological process
response to stress Orthology biological process
anatomical structure development Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
head development Orthology biological process
negative regulation of signal transduction Orthology biological process
negative regulation of apoptotic process Orthology biological process
cell adhesion Orthology biological process
developmental process Orthology biological process
cellular protein modification process Orthology biological process
brain development Orthology biological process
positive regulation of signal transduction Orthology biological process
cellular component organization Orthology biological process
cell development Orthology biological process
generation of neurons Orthology biological process

GO (Orthology)

111 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
skeletal system development Hs biological process
cartilage condensation Hs biological process
ossification Hs biological process
blood vessel development Hs biological process
osteoblast differentiation Hs biological process
tissue homeostasis Hs biological process
intramembranous ossification Hs biological process
endochondral ossification Hs biological process
protease binding Hs molecular function
chondrocyte differentiation Hs biological process
heart morphogenesis Hs biological process
extracellular matrix structural constituent Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
collagen trimer Hs cellular component
collagen type I trimer Hs cellular component
collagen type II trimer Hs cellular component
basement membrane Hs cellular component
extracellular space Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
endoplasmic reticulum lumen Hs cellular component
Golgi apparatus Hs cellular component
proteoglycan metabolic process Hs biological process
transforming growth factor beta receptor signaling pathway Hs biological process
Rho protein signal transduction Hs biological process
central nervous system development Hs biological process
response to nutrient Hs biological process
blood coagulation Hs biological process
visual perception Hs biological process
sensory perception of sound Hs biological process
regulation of blood pressure Hs biological process
response to mechanical stimulus Hs biological process
regulation of gene expression Hs biological process
positive regulation of epithelial to mesenchymal transition Hs biological process
protein transport Hs biological process
cytokine-mediated signaling pathway Hs biological process
extracellular matrix structural constituent conferring tensile strength Hs molecular function
secretory granule Hs cellular component
platelet activation Hs biological process
extracellular matrix organization Hs biological process
collagen fibril organization Hs biological process
positive regulation of cell migration Hs biological process
collagen catabolic process Hs biological process
protein binding, bridging Hs molecular function
notochord development Hs biological process
extracellular matrix Hs cellular component
response to nutrient levels Hs biological process
response to estradiol Hs biological process
collagen biosynthetic process Hs biological process
protein localization to nucleus Hs biological process
limb morphogenesis Hs biological process
collagen-activated tyrosine kinase receptor signaling pathway Hs biological process
wound healing Hs biological process
MHC class II protein binding Hs molecular function
inner ear morphogenesis Hs biological process
odontogenesis Hs biological process
response to drug Hs biological process
response to hydrogen peroxide Hs biological process
identical protein binding Hs molecular function
response to peptide hormone Hs biological process
skin development Hs biological process
skin morphogenesis Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
SMAD binding Hs molecular function
metal ion binding Hs molecular function
platelet-derived growth factor binding Hs molecular function
response to steroid hormone Hs biological process
skeletal system morphogenesis Hs biological process
embryonic skeletal system development Hs biological process
inner ear development Hs biological process
regulation of immune response Hs biological process
leukocyte migration Hs biological process
cartilage development Hs biological process
response to cAMP Hs biological process
response to hyperoxia Hs biological process
palate development Hs biological process
limb bud formation Hs biological process
embryonic skeletal joint morphogenesis Hs biological process
face morphogenesis Hs biological process
bone development Hs biological process
cartilage development involved in endochondral bone morphogenesis Hs biological process
extracellular exosome Hs cellular component
cellular response to amino acid stimulus Hs biological process
cellular response to mechanical stimulus Hs biological process
cellular response to retinoic acid Hs biological process
cellular response to tumor necrosis factor Hs biological process
cellular response to epidermal growth factor stimulus Hs biological process
cellular response to transforming growth factor beta stimulus Hs biological process
otic vesicle development Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
anterior head development Hs biological process
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand Hs biological process
integrin binding Hs molecular function
collagen type III trimer Hs cellular component
collagen type V trimer Hs cellular component
cell-matrix adhesion Hs biological process
integrin-mediated signaling pathway Hs biological process
heart development Hs biological process
aging Hs biological process
response to radiation Hs biological process
peptide cross-linking Hs biological process
cerebral cortex development Hs biological process
response to cytokine Hs biological process
positive regulation of Rho protein signal transduction Hs biological process
digestive tract development Hs biological process
eye morphogenesis Hs biological process
negative regulation of immune response Hs biological process
supramolecular fiber organization Hs biological process
negative regulation of neuron migration Hs biological process

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protease binding Hs molecular function 687 0.0
extracellular matrix structural constituent Hs molecular function 766 0.0
protein binding Hs molecular function 766 0.0
extracellular region Hs cellular component 766 0.0
proteinaceous extracellular matrix Hs cellular component 766 0.0
collagen trimer Hs cellular component 766 0.0
collagen type I trimer Hs cellular component 687 0.0
collagen type II trimer Hs cellular component 766 0.0
basement membrane Hs cellular component 766 0.0
extracellular space Hs cellular component 766 0.0
cytoplasm Hs cellular component 766 0.0
endoplasmic reticulum Hs cellular component 687 0.0
endoplasmic reticulum lumen Hs cellular component 766 0.0
Golgi apparatus Hs cellular component 632 0.0
extracellular matrix structural constituent conferring tensile strength Hs molecular function 766 0.0
secretory granule Hs cellular component 632 0.0
protein binding, bridging Hs molecular function 687 0.0
extracellular matrix Hs cellular component 766 0.0
MHC class II protein binding Hs molecular function 766 0.0
identical protein binding Hs molecular function 766 0.0
SMAD binding Hs molecular function 687 0.0
metal ion binding Hs molecular function 766 0.0
platelet-derived growth factor binding Hs molecular function 766 0.0
extracellular exosome Hs cellular component 687 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
extracellular matrix structural constituent Pfam molecular function 1.1E-90

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