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Gene Card

Best human hits

CNGA1; CNGA2; CNGA3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008468

Gene Model ID

KH2012:KH.C7.605

Location

KhC7:414696..420926

Transcript Models and Sequences

  KH2012:KH.C7.605.v1.A.ND1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000012069
ENSEMBL ENSCING00000012070
NCBI Reference Sequence XM_018812356.1
NCBI Reference Sequence XM_018812613.1
Collections

Gene collection 1 (N. Satoh)

1 result

cign013n16

Plate: R1CiGC41p10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
cNMP-bd_dom CDD Cyclic nucleotide-binding domain
RmlC-like_jellyroll Gene3D RmlC-like jelly roll fold
cNMP-bd_dom SMART Cyclic nucleotide-binding domain
cNMP-bd_dom Pfam Cyclic nucleotide-binding domain
cNMP-bd-like SUPERFAMILY Cyclic nucleotide-binding-like
cNMP-bd_dom ProSiteProfiles Cyclic nucleotide-binding domain
cNMP-bd_CS ProSitePatterns Cyclic nucleotide-binding, conserved site
Ion_trans_dom Pfam Ion transport domain

GOSlim

28 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
nucleotide binding Blast molecular function
protein binding Blast molecular function
calmodulin binding Blast molecular function
cytoplasm Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
ion transport Blast biological process
cation transport Blast biological process
protein C-terminus binding Blast molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
neuronal cell body Blast cellular component
transmembrane transport Blast biological process
organelle part Blast cellular component
cell projection part Blast cellular component
neuron projection Blast cellular component
macromolecular complex Blast cellular component
metal ion transport Blast biological process
monovalent inorganic cation transport Blast biological process
anion binding Blast molecular function
adenyl ribonucleotide binding Blast molecular function
guanyl ribonucleotide binding Blast molecular function
intracellular organelle part Blast cellular component
whole membrane Blast cellular component
cytoplasmic vesicle Blast cellular component
bounding membrane of organelle Blast cellular component
cell projection membrane Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 337 9.50e-107
nucleotide binding Hs molecular function 353 2.21e-112
photoreceptor outer segment Hs cellular component 342 2.36e-107
ion channel activity Hs molecular function 353 2.21e-112
intracellular cyclic nucleotide activated cation channel activity Hs molecular function 342 2.36e-107
intracellular cGMP activated cation channel activity Hs molecular function 353 2.21e-112
voltage-gated potassium channel activity Hs molecular function 353 2.21e-112
protein binding Hs molecular function 342 2.36e-107
calmodulin binding Hs molecular function 337 9.50e-107
cytoplasm Hs cellular component 353 2.21e-112
plasma membrane Hs cellular component 342 2.36e-107
integral component of plasma membrane Hs cellular component 353 2.21e-112
protein C-terminus binding Hs molecular function 353 2.21e-112
ligand-gated ion channel activity Hs molecular function 353 2.21e-112
membrane Hs cellular component 353 2.21e-112
integral component of membrane Hs cellular component 353 2.21e-112
dendrite Hs cellular component 353 2.21e-112
cAMP binding Hs molecular function 337 9.50e-107
cGMP binding Hs molecular function 353 2.21e-112
Golgi-associated vesicle membrane Hs cellular component 337 9.50e-107
photoreceptor outer segment membrane Hs cellular component 353 2.21e-112
neuronal cell body Hs cellular component 353 2.21e-112
perikaryon Hs cellular component 353 2.21e-112
ciliary membrane Hs cellular component 337 9.50e-107
transmembrane transporter complex Hs cellular component 353 2.21e-112

GO (InterProScan)

4 results

GO Term Analysis Type e-value
ion channel activity Pfam molecular function 4.6E-19
ion transport Pfam biological process 4.6E-19
membrane Pfam cellular component 4.6E-19
transmembrane transport Pfam biological process 4.6E-19

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