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GENE CARD

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  1. Gene 'KH2012:KH.C7.584'

Gene Card

Best human hits

IGFALS; LINGO4; LRIG2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008444

Gene Model ID

KH2012:KH.C7.584

Location

KhC7:4942434..4945872

Transcript Models and Sequences

  KH2012:KH.C7.584.v1.B.SL3-1
KH2012:KH.C7.584.v1.R.ND1-1
KH2012:KH.C7.584.v2.B.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001782
NCBI Reference Sequence XM_002126698.3
Collections

Gateway full ORF

2 results

cima85945

Plate: VES57_O01

cien130798

Plate: VES90_M19

Gene collection 1 (N. Satoh)

1 result

cieg052e03

Plate: R1CiGC23j02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Leu-rich_rpt ProSiteProfiles Leucine-rich repeat
Leu-rich_rpt Pfam Leucine-rich repeat
Leu-rich_rpt_typical-subtyp SMART Leucine-rich repeat, typical subtype
LRR_dom_sf Gene3D Leucine-rich repeat domain superfamily

GOSlim

17 results

GO Term Annotation Origin Type
receptor binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
plasma membrane Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
neuron projection Blast cellular component
neuronal cell body Blast cellular component
extracellular exosome Blast cellular component
cell projection part Blast cellular component
axon Blast cellular component
macromolecular complex Blast cellular component
vesicle Blast cellular component
intracellular organelle Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
receptor binding Hs molecular function 77.4 2.43e-15
protein binding Hs molecular function 77.4 2.43e-15
insulin-like growth factor binding Hs molecular function 75.5 9.26e-15
extracellular region Hs cellular component 75.5 9.26e-15
extracellular space Hs cellular component 75.5 9.26e-15
nucleoplasm Hs cellular component 75.5 9.26e-15
cytoplasm Hs cellular component 77.4 2.43e-15
plasma membrane Hs cellular component 77.4 2.43e-15
membrane Hs cellular component 77.4 2.43e-15
integral component of membrane Hs cellular component 77.4 2.43e-15
growth cone Hs cellular component 77.4 2.43e-15
insulin-like growth factor ternary complex Hs cellular component 75.5 9.26e-15
neuron projection Hs cellular component 77.4 2.43e-15
neuronal cell body Hs cellular component 77.4 2.43e-15
extracellular exosome Hs cellular component 75.5 9.26e-15
intracellular vesicle Hs cellular component 77.4 2.43e-15

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.0E-12

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