Aniseed - Gene card

Gene Card

Best human hits

SOX11; SOX12; SOX4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008378

Gene Model ID

KH2012:KH.C7.523

Location

KhC7:2394893..2414153

Transcript Models and Sequences

KH2012:KH.C7.523.v1.A.nonSL2-1
KH2012:KH.C7.523.v1.A.nonSL3-1
KH2012:KH.C7.523.v1.A.SL1-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

ciad009i05

Plate: R1CiGC01n20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

1 results

pfog314::NLS-lacZ REG00000368 [ no_output ]

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
HMG_box_dom_sf	SUPERFAMILY	High mobility group box domain superfamily
HMG_box_dom_sf	Gene3D	High mobility group box domain superfamily
HMG_box_dom	SMART	High mobility group box domain
HMG_box_dom	ProSiteProfiles	High mobility group box domain
HMG_box_dom	Pfam	High mobility group box domain

GOSlim

63 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
nervous system development	Orthology	biological process
heart development	Orthology	biological process
cell proliferation	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
negative regulation of cell proliferation	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process
positive regulation of Wnt signaling pathway	Orthology	biological process
neuron differentiation	Orthology	biological process
positive regulation of apoptotic process	Orthology	biological process
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
protein heterodimerization activity	Orthology	molecular function
negative regulation of cell death	Orthology	biological process
positive regulation of canonical Wnt signaling pathway	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
system development	Orthology	biological process
animal organ development	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
RNA binding	Orthology	molecular function
regulation of gene expression	Orthology	biological process
cell development	Orthology	biological process
neurogenesis	Orthology	biological process
central nervous system development	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
regulation of signal transduction	Orthology	biological process
cellular response to organic substance	Orthology	biological process
immune system process	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
protein ubiquitination	Orthology	biological process
protein transport	Orthology	biological process
cell-cell signaling	Orthology	biological process
macromolecular complex	Orthology	cellular component
developmental process	Orthology	biological process
intracellular signal transduction	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
nuclear part	Orthology	cellular component
cellular process	Orthology	biological process
intracellular protein transport	Orthology	biological process
protein localization to organelle	Orthology	biological process
generation of neurons	Orthology	biological process
anatomical structure development	Orthology	biological process
cell	Orthology	cellular component
cell division	Orthology	biological process
regulation of molecular function	Orthology	biological process
transcription regulatory region DNA binding	Orthology	molecular function

GO (Orthology)

86 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II core promoter sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
core promoter sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
RNA polymerase II transcription coactivator activity	Hs	molecular function
enhancer sequence-specific DNA binding	Hs	molecular function
skeletal system development	Hs	biological process
kidney development	Hs	biological process
neural tube formation	Hs	biological process
lens morphogenesis in camera-type eye	Hs	biological process
outflow tract morphogenesis	Hs	biological process
cardiac ventricle formation	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
translation	Hs	biological process
multicellular organism development	Hs	biological process
nervous system development	Hs	biological process
heart development	Hs	biological process
translation factor activity, RNA binding	Hs	molecular function
cell proliferation	Hs	biological process
positive regulation of cell proliferation	Hs	biological process
negative regulation of cell proliferation	Hs	biological process
positive regulation of gene expression	Hs	biological process
negative regulation of gene expression	Hs	biological process
oligodendrocyte development	Hs	biological process
glial cell proliferation	Hs	biological process
neural crest cell development	Hs	biological process
regulation of transforming growth factor beta receptor signaling pathway	Hs	biological process
spinal cord development	Hs	biological process
spinal cord motor neuron differentiation	Hs	biological process
glial cell development	Hs	biological process
cell differentiation	Hs	biological process
positive regulation of Wnt signaling pathway	Hs	biological process
neuron differentiation	Hs	biological process
T cell differentiation	Hs	biological process
positive regulation of BMP signaling pathway	Hs	biological process
endocrine pancreas development	Hs	biological process
negative regulation of protein ubiquitination	Hs	biological process
regulation of protein stability	Hs	biological process
positive regulation of insulin secretion	Hs	biological process
protein-DNA complex	Hs	cellular component
somatic stem cell population maintenance	Hs	biological process
positive regulation of hippo signaling	Hs	biological process
skeletal muscle cell differentiation	Hs	biological process
glucose homeostasis	Hs	biological process
DNA damage response, detection of DNA damage	Hs	biological process
positive regulation of apoptotic process	Hs	biological process
nuclear transcription factor complex	Hs	cellular component
cell fate commitment	Hs	biological process
positive regulation of neuron differentiation	Hs	biological process
positive regulation of osteoblast differentiation	Hs	biological process
positive regulation of translation	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of protein export from nucleus	Hs	biological process
positive regulation of hormone secretion	Hs	biological process
protein heterodimerization activity	Hs	molecular function
sympathetic nervous system development	Hs	biological process
embryonic digestive tract morphogenesis	Hs	biological process
positive regulation of neurogenesis	Hs	biological process
protein stabilization	Hs	biological process
hard palate development	Hs	biological process
soft palate development	Hs	biological process
canonical Wnt signaling pathway	Hs	biological process
limb bud formation	Hs	biological process
negative regulation of glial cell proliferation	Hs	biological process
negative regulation of cell death	Hs	biological process
somite development	Hs	biological process
cornea development in camera-type eye	Hs	biological process
closure of optic fissure	Hs	biological process
protein-DNA complex assembly	Hs	biological process
cellular response to glucose stimulus	Hs	biological process
positive regulation of canonical Wnt signaling pathway	Hs	biological process
positive regulation of stem cell proliferation	Hs	biological process
negative regulation of transcription regulatory region DNA binding	Hs	biological process

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
transcription regulatory region sequence-specific DNA binding	Hs	molecular function	131	5.66e-33
RNA polymerase II core promoter sequence-specific DNA binding	Hs	molecular function	129	1.92e-32
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	131	5.66e-33
core promoter sequence-specific DNA binding	Hs	molecular function	131	5.66e-33
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	131	5.66e-33
RNA polymerase II transcription coactivator activity	Hs	molecular function	131	5.66e-33
enhancer sequence-specific DNA binding	Hs	molecular function	129	1.92e-32
DNA binding	Hs	molecular function	131	5.66e-33
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	131	5.66e-33
protein binding	Hs	molecular function	131	5.66e-33
nucleus	Hs	cellular component	131	5.66e-33
nucleoplasm	Hs	cellular component	131	5.66e-33
cytoplasm	Hs	cellular component	131	5.66e-33
mitochondrion	Hs	cellular component	131	5.66e-33
translation factor activity, RNA binding	Hs	molecular function	129	1.92e-32
protein-DNA complex	Hs	cellular component	127	9.63e-33
nuclear transcription factor complex	Hs	cellular component	131	5.66e-33
protein heterodimerization activity	Hs	molecular function	131	5.66e-33

GO (InterProScan)