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GENE CARD

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Gene Card

Best human hits

SOX11; SOX12; SOX4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008378

Gene Model ID

KH2012:KH.C7.523

Location

KhC7:2394893..2414153

Transcript Models and Sequences

  KH2012:KH.C7.523.v1.A.nonSL2-1
KH2012:KH.C7.523.v1.A.nonSL3-1
KH2012:KH.C7.523.v1.A.SL1-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

cima811046

Plate: VES58_O01

cien133112

Plate: VES91_E04

Gene collection 1 (N. Satoh)

2 results

citb1l9

Plate: R1CiGC30m01

ciad009i05

Plate: R1CiGC01n20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
HMG_box_dom_sf SUPERFAMILY High mobility group box domain superfamily
HMG_box_dom_sf Gene3D High mobility group box domain superfamily
HMG_box_dom SMART High mobility group box domain
HMG_box_dom ProSiteProfiles High mobility group box domain
HMG_box_dom Pfam High mobility group box domain

GOSlim

63 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
nervous system development Orthology biological process
heart development Orthology biological process
cell proliferation Orthology biological process
positive regulation of cell proliferation Orthology biological process
negative regulation of cell proliferation Orthology biological process
positive regulation of gene expression Orthology biological process
negative regulation of gene expression Orthology biological process
cell differentiation Orthology biological process
positive regulation of Wnt signaling pathway Orthology biological process
neuron differentiation Orthology biological process
positive regulation of apoptotic process Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
negative regulation of cell death Orthology biological process
positive regulation of canonical Wnt signaling pathway Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
system development Orthology biological process
animal organ development Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
anatomical structure morphogenesis Orthology biological process
RNA binding Orthology molecular function
regulation of gene expression Orthology biological process
cell development Orthology biological process
neurogenesis Orthology biological process
central nervous system development Orthology biological process
cell surface receptor signaling pathway Orthology biological process
regulation of signal transduction Orthology biological process
cellular response to organic substance Orthology biological process
immune system process Orthology biological process
positive regulation of signal transduction Orthology biological process
protein ubiquitination Orthology biological process
protein transport Orthology biological process
cell-cell signaling Orthology biological process
macromolecular complex Orthology cellular component
developmental process Orthology biological process
intracellular signal transduction Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
nuclear part Orthology cellular component
cellular process Orthology biological process
intracellular protein transport Orthology biological process
protein localization to organelle Orthology biological process
generation of neurons Orthology biological process
anatomical structure development Orthology biological process
cell Orthology cellular component
cell division Orthology biological process
regulation of molecular function Orthology biological process
transcription regulatory region DNA binding Orthology molecular function

GO (Orthology)

86 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
transcription regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
core promoter sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
RNA polymerase II transcription coactivator activity Hs molecular function
enhancer sequence-specific DNA binding Hs molecular function
skeletal system development Hs biological process
kidney development Hs biological process
neural tube formation Hs biological process
lens morphogenesis in camera-type eye Hs biological process
outflow tract morphogenesis Hs biological process
cardiac ventricle formation Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
translation Hs biological process
multicellular organism development Hs biological process
nervous system development Hs biological process
heart development Hs biological process
translation factor activity, RNA binding Hs molecular function
cell proliferation Hs biological process
positive regulation of cell proliferation Hs biological process
negative regulation of cell proliferation Hs biological process
positive regulation of gene expression Hs biological process
negative regulation of gene expression Hs biological process
oligodendrocyte development Hs biological process
glial cell proliferation Hs biological process
neural crest cell development Hs biological process
regulation of transforming growth factor beta receptor signaling pathway Hs biological process
spinal cord development Hs biological process
spinal cord motor neuron differentiation Hs biological process
glial cell development Hs biological process
cell differentiation Hs biological process
positive regulation of Wnt signaling pathway Hs biological process
neuron differentiation Hs biological process
T cell differentiation Hs biological process
positive regulation of BMP signaling pathway Hs biological process
endocrine pancreas development Hs biological process
negative regulation of protein ubiquitination Hs biological process
regulation of protein stability Hs biological process
positive regulation of insulin secretion Hs biological process
protein-DNA complex Hs cellular component
somatic stem cell population maintenance Hs biological process
positive regulation of hippo signaling Hs biological process
skeletal muscle cell differentiation Hs biological process
glucose homeostasis Hs biological process
DNA damage response, detection of DNA damage Hs biological process
positive regulation of apoptotic process Hs biological process
nuclear transcription factor complex Hs cellular component
cell fate commitment Hs biological process
positive regulation of neuron differentiation Hs biological process
positive regulation of osteoblast differentiation Hs biological process
positive regulation of translation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
negative regulation of protein export from nucleus Hs biological process
positive regulation of hormone secretion Hs biological process
protein heterodimerization activity Hs molecular function
sympathetic nervous system development Hs biological process
embryonic digestive tract morphogenesis Hs biological process
positive regulation of neurogenesis Hs biological process
protein stabilization Hs biological process
hard palate development Hs biological process
soft palate development Hs biological process
canonical Wnt signaling pathway Hs biological process
limb bud formation Hs biological process
negative regulation of glial cell proliferation Hs biological process
negative regulation of cell death Hs biological process
somite development Hs biological process
cornea development in camera-type eye Hs biological process
closure of optic fissure Hs biological process
protein-DNA complex assembly Hs biological process
cellular response to glucose stimulus Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of stem cell proliferation Hs biological process
negative regulation of transcription regulatory region DNA binding Hs biological process

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 131 5.66e-33
RNA polymerase II core promoter sequence-specific DNA binding Hs molecular function 129 1.92e-32
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 131 5.66e-33
core promoter sequence-specific DNA binding Hs molecular function 131 5.66e-33
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 131 5.66e-33
RNA polymerase II transcription coactivator activity Hs molecular function 131 5.66e-33
enhancer sequence-specific DNA binding Hs molecular function 129 1.92e-32
DNA binding Hs molecular function 131 5.66e-33
transcription factor activity, sequence-specific DNA binding Hs molecular function 131 5.66e-33
protein binding Hs molecular function 131 5.66e-33
nucleus Hs cellular component 131 5.66e-33
nucleoplasm Hs cellular component 131 5.66e-33
cytoplasm Hs cellular component 131 5.66e-33
mitochondrion Hs cellular component 131 5.66e-33
translation factor activity, RNA binding Hs molecular function 129 1.92e-32
protein-DNA complex Hs cellular component 127 9.63e-33
nuclear transcription factor complex Hs cellular component 131 5.66e-33
protein heterodimerization activity Hs molecular function 131 5.66e-33

GO (InterProScan)

No result

GO Term Analysis Type e-value

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