Aniseed - Gene card

Gene 'KH2012:KH.C7.491'

Gene Card

Best human hits

L3MBTL1; L3MBTL3; L3MBTL4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008343

Gene Model ID

KH2012:KH.C7.491

Location

KhC7:523113..527851

Transcript Models and Sequences

KH2012:KH.C7.491.v1.A.SL1-1
KH2012:KH.C7.491.v2.A.SL2-1
KH2012:KH.C7.491.v2.A.SL3-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004084
ENSEMBL	ENSCING00000012063
NCBI Reference Sequence	XM_002122710.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg029d05

Plate: R1CiGC20c18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Mbt	ProSiteProfiles	Mbt repeat
SAM	ProSiteProfiles	Sterile alpha motif domain
SAM	Pfam	Sterile alpha motif domain
SAM	SMART	Sterile alpha motif domain
Mbt	Pfam	Mbt repeat
Mbt	SMART	Mbt repeat
Znf_C2HC_sf	SUPERFAMILY	Zinc finger, C2HC-type superfamily
Znf_C2HC	Pfam	Zinc finger, C2HC-type
SAM/pointed_sf	SUPERFAMILY	Sterile alpha motif/pointed domain superfamily
Znf_C2HC	ProSiteProfiles	Zinc finger, C2HC-type

GOSlim

22 results

GO Term	Annotation Origin	Type
chromatin binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
plasma membrane	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
zinc ion binding	Orthology	molecular function
identical protein binding	Orthology	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
metal ion binding	Orthology	molecular function
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
organelle organization	Orthology	biological process
animal organ development	Orthology	biological process
immune system process	Orthology	biological process
cell differentiation	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
cell development	Orthology	biological process
cell cycle	Orthology	biological process

GO (Orthology)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
chromatin	Hs	cellular component
condensed chromosome	Hs	cellular component
chromatin binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
plasma membrane	Hs	cellular component
chromatin organization	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of mitotic nuclear division	Hs	biological process
zinc ion binding	Hs	molecular function
hemopoiesis	Hs	biological process
myeloid cell differentiation	Hs	biological process
macrophage differentiation	Hs	biological process
granulocyte differentiation	Hs	biological process
nucleosome binding	Hs	molecular function
nucleosomal histone binding	Hs	molecular function
SAM domain binding	Hs	molecular function
methylated histone binding	Hs	molecular function
histone binding	Hs	molecular function
identical protein binding	Hs	molecular function
erythrocyte maturation	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
metal ion binding	Hs	molecular function
regulation of cell cycle	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromatin	Hs	cellular component	359	8.71e-111
condensed chromosome	Hs	cellular component	359	8.71e-111
chromatin binding	Hs	molecular function	359	8.71e-111
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	446	2.64e-144
protein binding	Hs	molecular function	446	2.64e-144
nucleus	Hs	cellular component	446	2.64e-144
nucleoplasm	Hs	cellular component	359	8.71e-111
nucleolus	Hs	cellular component	446	2.64e-144
plasma membrane	Hs	cellular component	359	8.71e-111
zinc ion binding	Hs	molecular function	446	2.64e-144
nucleosome binding	Hs	molecular function	359	8.71e-111
nucleosomal histone binding	Hs	molecular function	359	8.71e-111
SAM domain binding	Hs	molecular function	359	8.71e-111
methylated histone binding	Hs	molecular function	359	8.71e-111
histone binding	Hs	molecular function	359	8.71e-111
identical protein binding	Hs	molecular function	359	8.71e-111
metal ion binding	Hs	molecular function	413	8.72e-134

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	Pfam	molecular function	8.4E-12
protein binding	Pfam	molecular function	9.0E-12
nucleus	SMART	cellular component	5.9E-42
regulation of transcription, DNA-templated	SMART	biological process	5.9E-42
zinc ion binding	Pfam	molecular function	8.4E-12