Aniseed - Gene card

Gene 'KH2012:KH.C6.80'

Gene Card

Best human hits

TFG

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007896

Gene Model ID

KH2012:KH.C6.80

Location

KhC6:1384383..1388442

Transcript Models and Sequences

KH2012:KH.C6.80.v1.A.SL1-1
KH2012:KH.C6.80.v1.A.SL2-1
KH2012:KH.C6.80.v1.A.SL3-1
KH2012:KH.C6.80.v1.A.SL4-1
KH2012:KH.C6.80.v1.A.SL5-1
KH2012:KH.C6.80.v2.A.SL1-2
KH2012:KH.C6.80.v2.A.SL2-2
KH2012:KH.C6.80.v2.A.SL3-2
KH2012:KH.C6.80.v2.A.SL4-2
KH2012:KH.C6.80.v2.A.SL5-2

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004004
NCBI Reference Sequence	XM_002125470.3
NCBI Reference Sequence	XM_004226102.2

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cieg039c09

Plate: R1CiGC21d02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
PB1_TFG	CDD	TFG, PB1 domain
PB1_dom	Pfam	PB1 domain
PB1_dom	ProSiteProfiles	PB1 domain
PB1_dom	SMART	PB1 domain

GOSlim

16 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
signal transducer activity	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
signal transduction	Orthology	biological process
identical protein binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
intracellular transport	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
organelle organization	Orthology	biological process
membrane organization	Orthology	biological process
endoplasmic reticulum part	Orthology	cellular component

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
signal transducer activity	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ER to Golgi vesicle-mediated transport	Hs	biological process
signal transduction	Hs	biological process
identical protein binding	Hs	molecular function
positive regulation of I-kappaB kinase/NF-kappaB signaling	Hs	biological process
COPII vesicle coating	Hs	biological process
extracellular exosome	Hs	cellular component
endoplasmic reticulum exit site	Hs	cellular component

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	180	3.62e-52
signal transducer activity	Hs	molecular function	180	3.62e-52
protein binding	Hs	molecular function	180	3.62e-52
cytoplasm	Hs	cellular component	180	3.62e-52
endoplasmic reticulum	Hs	cellular component	180	3.62e-52
cytosol	Hs	cellular component	180	3.62e-52
identical protein binding	Hs	molecular function	180	3.62e-52
extracellular exosome	Hs	cellular component	180	3.62e-52
endoplasmic reticulum exit site	Hs	cellular component	180	3.62e-52

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SMART	molecular function	5.8E-16