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GENE CARD

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  1. Gene 'KH2012:KH.C6.145'

Gene Card

Best human hits

CHRD; CHRDL1; CHRDL2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007664

Gene Model ID

KH2012:KH.C6.145

Location

KhC6:1223476..1232250

Transcript Models and Sequences

  KH2012:KH.C6.145.v1.A.ND1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000006001
ENSEMBL ENSCING00000022945
ENSEMBL ENSCING00000023715
NCBI Reference Sequence XM_002123270.4
Collections

Gateway full ORF

4 results

cien37373

Plate: VES76_A07

cien90264

Plate: VES84_C13

cien202528

Plate: VES101_F19

cien226483

Plate: VES105_O05

Gene collection 1 (N. Satoh)

1 result

cicl016e09

Plate: R1CiGC10g12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
VWF_dom ProSitePatterns VWFC domain
CHRD ProSiteProfiles CHRD
Chordin PIRSF Chordin
VWF_dom Pfam VWFC domain
VWF_dom SMART VWFC domain
CHRD Pfam CHRD
CHRD SMART CHRD
VWF_dom ProSiteProfiles VWFC domain

GOSlim

21 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
extracellular region Orthology cellular component
extracellular space Orthology cellular component
cytoplasm Blast cellular component
endoplasmic reticulum lumen Blast cellular component
multicellular organism development Orthology biological process
nervous system development Orthology biological process
central nervous system development Orthology biological process
cell differentiation Orthology biological process
system development Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
anion binding Orthology molecular function
carbohydrate derivative binding Orthology molecular function
cell surface receptor signaling pathway Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
cellular response to organic substance Orthology biological process
animal organ development Orthology biological process
cell migration Orthology biological process
negative regulation of signal transduction Orthology biological process
brain development Orthology biological process
cell adhesion Orthology biological process

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
skeletal system development Hs biological process
osteoblast differentiation Hs biological process
gastrulation with mouth forming second Hs biological process
mesoderm formation Hs biological process
protein binding Hs molecular function
extracellular region Hs cellular component
extracellular space Hs cellular component
multicellular organism development Hs biological process
pattern specification process Hs biological process
central nervous system development Hs biological process
heparin binding Hs molecular function
dorsal/ventral pattern formation Hs biological process
cytokine binding Hs molecular function
BMP signaling pathway involved in spinal cord dorsal/ventral patterning Hs biological process
negative regulation of cell migration Hs biological process
negative regulation of BMP signaling pathway Hs biological process
forebrain development Hs biological process
floor plate development Hs biological process
syndecan binding Hs molecular function
negative regulation of osteoblast differentiation Hs biological process
positive regulation of cell adhesion Hs biological process

GO (Blast)

8 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protein binding Hs molecular function 461 2.61e-147
extracellular region Hs cellular component 461 2.61e-147
extracellular space Hs cellular component 461 2.61e-147
cytoplasm Hs cellular component 67.8 1.36e-11
endoplasmic reticulum lumen Hs cellular component 63.9 2.44e-10
heparin binding Hs molecular function 461 2.61e-147
cytokine binding Hs molecular function 461 2.61e-147
syndecan binding Hs molecular function 461 2.61e-147

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.1E-7
multicellular organism development PIRSF biological process 3.5E-270

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