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GENE CARD

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  1. Gene 'KH2012:KH.C6.128'

Gene Card

Best human hits

CELF3; CELF5; CELF6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007645

Gene Model ID

KH2012:KH.C6.128

Location

KhC6:144720..157885

Transcript Models and Sequences

  KH2012:KH.C6.128.v1.A.SL2-1
KH2012:KH.C6.128.v2.A.SL1-1

External Database Gene Card

External database links

7 results

Database Gene ID
ENSEMBL ENSCING00000001999
NCBI Reference Sequence XM_002130938.3
NCBI Reference Sequence XM_018812260.1
NCBI Reference Sequence XM_018812262.1
NCBI Reference Sequence XM_018812263.1
NCBI Reference Sequence XM_018812264.1
NCBI Reference Sequence XR_001974774.1
Collections

Gateway full ORF

2 results

cien61186

Plate: VES79_E21

cien149164

Plate: VES93_F14

Gene collection 1 (N. Satoh)

1 result

citb028e11

Plate: R1CiGC31g18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

2 results

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom SMART RNA recognition motif domain
CELF3/4/5/6_RRM1 CDD CELF-3/4/5/6, RNA recognition motif 1
RRM_dom Pfam RNA recognition motif domain

GOSlim

6 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
RNA binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
nuclear body Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

8 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 452 2.18e-155
RNA binding Hs molecular function 452 2.18e-155
nucleus Hs cellular component 452 2.18e-155
cytoplasm Hs cellular component 452 2.18e-155
cytosol Hs cellular component 433 7.69e-148
nuclear body Hs cellular component 451 4.25e-155
pre-mRNA binding Hs molecular function 452 2.18e-155
7SK snRNA binding Hs molecular function 451 4.25e-155

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 8.88E-41
RNA binding CDD molecular function 4.7022E-55

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