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Gene Card

Best human hits

MATR3; RBM20

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007593

Gene Model ID

KH2012:KH.C5.81

Location

KhC5:1950696..1958487

Transcript Models and Sequences

  KH2012:KH.C5.81.v1.A.nonSL7-1
KH2012:KH.C5.81.v1.A.SL1-1
KH2012:KH.C5.81.v1.A.SL2-1
KH2012:KH.C5.81.v1.A.SL3-1
KH2012:KH.C5.81.v1.A.SL5-1
KH2012:KH.C5.81.v2.A.nonSL7-1
KH2012:KH.C5.81.v2.A.SL1-1
KH2012:KH.C5.81.v2.A.SL2-1
KH2012:KH.C5.81.v2.A.SL3-1
KH2012:KH.C5.81.v2.A.SL5-1
KH2012:KH.C5.81.v3.A.ND4-1
KH2012:KH.C5.81.v4.A.SL6-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000009328
ENSEMBL ENSCING00000024548
Collections

Gateway full ORF

2 results

cien167515

Plate: VES96_M05

cien205312

Plate: VES102_C05

Gene collection 1 (N. Satoh)

1 result

ciad058f15

Plate: R1CiGC06a17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
SAP_dom_sf Gene3D SAP domain superfamily
Matrin/U1-like-C_Znf_C2H2 SMART Matrin/U1-C-like, C2H2-type zinc finger
SAP_dom Pfam SAP domain
CIZ1 PANTHER Cip1-interacting zinc finger protein
SAP_dom_sf SUPERFAMILY SAP domain superfamily
Matrin/U1-C_Znf_C2H2 ProSiteProfiles Matrin/U1-C, C2H2-type zinc finger
SAP_dom ProSiteProfiles SAP domain
SAP_dom SMART SAP domain

GOSlim

12 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
RNA binding Blast molecular function
structural molecule activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
zinc ion binding Blast molecular function
membrane Blast cellular component
identical protein binding Blast molecular function
metal ion binding Blast molecular function
organelle inner membrane Blast cellular component
nuclear membrane Blast cellular component
nuclear lumen Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 70.5 2.57e-12
RNA binding Hs molecular function 70.5 2.57e-12
structural molecule activity Hs molecular function 67.0 2.48e-11
protein binding Hs molecular function 67.0 2.48e-11
nucleus Hs cellular component 70.5 2.57e-12
nuclear inner membrane Hs cellular component 67.0 2.48e-11
zinc ion binding Hs molecular function 70.5 2.57e-12
membrane Hs cellular component 67.0 2.48e-11
nuclear matrix Hs cellular component 67.0 2.48e-11
miRNA binding Hs molecular function 67.0 2.48e-11
identical protein binding Hs molecular function 67.0 2.48e-11
metal ion binding Hs molecular function 67.0 2.48e-11

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 2.2E-4
nucleus ProSiteProfiles cellular component 9.494
zinc ion binding SMART molecular function 2.2E-4

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