Aniseed - Gene card

Gene Card

Best human hits

POC1A; POC1B; THOC3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007538

Gene Model ID

KH2012:KH.C5.632

Location

KhC5:1665590..1669774

Transcript Models and Sequences

KH2012:KH.C5.632.v1.A.ND1-1
KH2012:KH.C5.632.v1.A.SL2-1
KH2012:KH.C5.632.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000003396
NCBI Reference Sequence	XM_002125410.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cits035l22

Plate: R1CiGC34d15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat	ProSiteProfiles	WD40 repeat
WD40_repeat	Pfam	WD40 repeat
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
TIF_beta_prop-like	Pfam	Translation initiation factor, beta propellor-like domain
G-protein_beta_WD-40_rep	PRINTS	G-protein beta WD-40 repeat
WD40_repeat	SMART	WD40 repeat

GOSlim

28 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
centrosome	Blast	cellular component
cytoskeleton	Blast	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
nuclear speck	Orthology	cellular component
cell projection	Blast	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
transcription from RNA polymerase II promoter	Orthology	biological process
organic substance transport	Orthology	biological process
intracellular transport	Orthology	biological process
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
cytoskeletal part	Blast	cellular component
microtubule cytoskeleton	Blast	cellular component
cytoplasmic part	Blast	cellular component
microtubule organizing center	Blast	cellular component
cell projection part	Blast	cellular component
plasma membrane region	Blast	cellular component

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
transcription export complex	Hs	cellular component
THO complex part of transcription export complex	Hs	cellular component
nuclear chromosome, telomeric region	Hs	cellular component
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
termination of RNA polymerase II transcription	Hs	biological process
mRNA processing	Hs	biological process
RNA export from nucleus	Hs	biological process
mRNA export from nucleus	Hs	biological process
RNA splicing	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
nuclear speck	Hs	cellular component
mRNA 3'-end processing	Hs	biological process
mRNA transport	Hs	biological process

GO (Blast)