Aniseed - Gene card

Gene Card

Best human hits

ACTG1; ACTR1A; ACTR1B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007479

Gene Model ID

KH2012:KH.C5.58

Location

KhC5:154172..159892

Transcript Models and Sequences

KH2012:KH.C5.58.v1.A.nonSL6-1
KH2012:KH.C5.58.v1.A.SL2-1
KH2012:KH.C5.58.v1.A.SL5-1
KH2012:KH.C5.58.v1.R.ND1-1
KH2012:KH.C5.58.v2.A.nonSL6-2
KH2012:KH.C5.58.v2.A.SL2-2
KH2012:KH.C5.58.v2.A.SL5-2
KH2012:KH.C5.58.v2.R.ND1-2
KH2012:KH.C5.58.v3.A.ND3-3
KH2012:KH.C5.58.v3.A.nonSL7-3
KH2012:KH.C5.58.v4.A.nonSL6-3
KH2012:KH.C5.58.v4.A.SL2-3
KH2012:KH.C5.58.v4.A.SL5-3
KH2012:KH.C5.58.v4.R.ND4-3

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002126294.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg046g13

Plate: R1CiGC23c05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Actin	Pfam	Actin family
Actin	PRINTS	Actin family
Actin/actin-like_CS	ProSitePatterns	Actin/actin-like conserved site
Actin	PANTHER	Actin family
Actin	SMART	Actin family
Arp1	PANTHER	Actin-related protein 1 family

GOSlim

34 results

GO Term	Annotation Origin	Type
G2/M transition of mitotic cell cycle	Orthology	biological process
nucleotide binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
extracellular region	Orthology	cellular component
extracellular space	Blast	cellular component
nucleus	Blast	cellular component
cytoplasm	Orthology	cellular component
centrosome	Orthology	cellular component
microtubule organizing center	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
plasma membrane	Blast	cellular component
focal adhesion	Blast	cellular component
spermatogenesis	Orthology	biological process
microtubule cytoskeleton	Orthology	cellular component
membrane	Orthology	cellular component
ubiquitin protein ligase binding	Blast	molecular function
identical protein binding	Blast	molecular function
myelin sheath	Orthology	cellular component
extracellular exosome	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cell periphery	Orthology	cellular component
intracellular transport	Orthology	biological process
immune system process	Orthology	biological process
cytoplasmic vesicle	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
endomembrane system	Orthology	cellular component
intracellular organelle lumen	Orthology	cellular component
organelle organization	Blast	biological process
structural molecule activity	Blast	molecular function
intracellular non-membrane-bounded organelle	Blast	cellular component

GO (Orthology)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
G2/M transition of mitotic cell cycle	Hs	biological process
nucleotide binding	Hs	molecular function
manchette	Hs	cellular component
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
extracellular region	Hs	cellular component
cytoplasm	Hs	cellular component
centrosome	Hs	cellular component
centriole	Hs	cellular component
microtubule organizing center	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
dynactin complex	Hs	cellular component
microtubule associated complex	Hs	cellular component
cell cortex	Hs	cellular component
ER to Golgi vesicle-mediated transport	Hs	biological process
spermatogenesis	Hs	biological process
regulation of G2/M transition of mitotic cell cycle	Hs	biological process
microtubule cytoskeleton	Hs	cellular component
membrane	Hs	cellular component
vesicle-mediated transport	Hs	biological process
antigen processing and presentation of exogenous peptide antigen via MHC class II	Hs	biological process
COPI-coated vesicle	Hs	cellular component
secretory granule lumen	Hs	cellular component
myelin sheath	Hs	cellular component
extracellular exosome	Hs	cellular component
cell cortex region	Hs	cellular component
ficolin-1-rich granule lumen	Hs	cellular component

GO (Blast)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	632	0.0
manchette	Hs	cellular component	632	0.0
structural constituent of cytoskeleton	Hs	molecular function	447	9.81e-158
protein binding	Hs	molecular function	632	0.0
profilin binding	Hs	molecular function	447	9.81e-158
ATP binding	Hs	molecular function	632	0.0
extracellular region	Hs	cellular component	629	0.0
extracellular space	Hs	cellular component	447	9.81e-158
nucleus	Hs	cellular component	447	9.81e-158
cytoplasm	Hs	cellular component	632	0.0
centrosome	Hs	cellular component	632	0.0
centriole	Hs	cellular component	632	0.0
microtubule organizing center	Hs	cellular component	632	0.0
cytosol	Hs	cellular component	632	0.0
cytoskeleton	Hs	cellular component	632	0.0
dynactin complex	Hs	cellular component	632	0.0
microtubule associated complex	Hs	cellular component	632	0.0
actin filament	Hs	cellular component	447	9.81e-158
plasma membrane	Hs	cellular component	447	9.81e-158
focal adhesion	Hs	cellular component	447	9.81e-158
cell cortex	Hs	cellular component	632	0.0
actin cytoskeleton	Hs	cellular component	447	9.81e-158
microtubule cytoskeleton	Hs	cellular component	632	0.0
membrane	Hs	cellular component	629	0.0
myofibril	Hs	cellular component	447	9.81e-158
COPI-coated vesicle	Hs	cellular component	632	0.0
ubiquitin protein ligase binding	Hs	molecular function	447	9.81e-158
filamentous actin	Hs	cellular component	447	9.81e-158
secretory granule lumen	Hs	cellular component	629	0.0
identical protein binding	Hs	molecular function	447	9.81e-158
myelin sheath	Hs	cellular component	632	0.0
phagocytic vesicle	Hs	cellular component	447	9.81e-158
extracellular exosome	Hs	cellular component	632	0.0
blood microparticle	Hs	cellular component	447	9.81e-158
dense body	Hs	cellular component	447	9.81e-158
cell cortex region	Hs	cellular component	632	0.0
ficolin-1-rich granule lumen	Hs	cellular component	629	0.0

GO (InterProScan)