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GENE CARD

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  1. Gene 'KH2012:KH.C5.34'

Gene Card

Best human hits

ALX3; ALX4; UNCX

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007214

Gene Model ID

KH2012:KH.C5.34

Location

KhC5:652233..655808

Transcript Models and Sequences

  KH2012:KH.C5.34.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000009645
NCBI Reference Sequence XM_009860412.2
Collections

Gene collection 1 (N. Satoh)

1 result

citb049b24

Plate: R1CiGC45d02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Homeobox_dom CDD Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom SMART Homeobox domain
Homeobox_dom Pfam Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom ProSiteProfiles Homeobox domain

GOSlim

12 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
nucleus Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
sequence-specific DNA binding Blast molecular function
protein heterodimerization activity Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component
protein binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 107 5.85e-27
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 173 1.46e-50
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 107 5.85e-27
DNA binding Hs molecular function 173 1.46e-50
transcription factor activity, sequence-specific DNA binding Hs molecular function 107 5.85e-27
nucleus Hs cellular component 173 1.46e-50
transcription factor complex Hs cellular component 107 5.85e-27
sequence-specific DNA binding Hs molecular function 173 1.46e-50
protein heterodimerization activity Hs molecular function 107 5.85e-27
HMG box domain binding Hs molecular function 107 5.85e-27

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 1.5E-24
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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