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GENE CARD

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Gene Card

Best human hits

ARNT; ARNT2; ARNTL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007081

Gene Model ID

KH2012:KH.C5.213

Location

KhC5:3472025..3480789

Transcript Models and Sequences

  KH2012:KH.C5.213.v1.A.SL1-2
KH2012:KH.C5.213.v1.A.SL2-2
KH2012:KH.C5.213.v2.A.SL1-1
KH2012:KH.C5.213.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008102
NCBI Reference Sequence NM_001078187.1
Collections

Gateway full ORF

2 results

cima821461

Plate: VES60_D03

cien120311

Plate: VES89_I03

Gene collection 1 (N. Satoh)

2 results

ciad002e16

Plate: R1CiGC01i19

cicl017l13

Plate: R1CiGC10h11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
PAC SMART PAC motif
PAS CDD PAS domain
Nuc_translocat PRINTS Nuclear translocator
PAS SMART PAS domain
PAS ProSiteProfiles PAS domain
PAS-like_dom_sf SUPERFAMILY PAS domain superfamily
PAS TIGRFAM PAS domain
PAS_fold Pfam PAS fold
bHLH_dom Pfam Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom SMART Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily

GOSlim

41 results

GO Term Annotation Origin Type
transcription regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription factor activity, transcription factor binding Orthology molecular function
response to hypoxia Orthology biological process
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
central nervous system development Orthology biological process
brain development Orthology biological process
transcription factor binding Orthology molecular function
positive regulation of cell proliferation Orthology biological process
nuclear body Orthology cellular component
cell differentiation Orthology biological process
negative regulation of apoptotic process Orthology biological process
intracellular membrane-bounded organelle Blast cellular component
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
protein dimerization activity Orthology molecular function
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
cellular metabolic process Orthology biological process
receptor binding Orthology molecular function
signal transduction Orthology biological process
response to lipid Orthology biological process
transcription regulatory region DNA binding Orthology molecular function
mRNA metabolic process Orthology biological process
immune system process Orthology biological process
animal organ development Orthology biological process
nuclear part Orthology cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, transcription factor binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
response to hypoxia Hs biological process
positive regulation of endothelial cell proliferation Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
transcription coactivator activity Hs molecular function
aryl hydrocarbon receptor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
xenobiotic metabolic process Hs biological process
central nervous system development Hs biological process
brain development Hs biological process
transcription factor binding Hs molecular function
positive regulation of cell proliferation Hs biological process
positive regulation of vascular endothelial growth factor production Hs biological process
nuclear body Hs cellular component
aryl hydrocarbon receptor binding Hs molecular function
cell differentiation Hs biological process
intracellular receptor signaling pathway Hs biological process
response to estradiol Hs biological process
enhancer binding Hs molecular function
mRNA transcription from RNA polymerase II promoter Hs biological process
negative regulation of apoptotic process Hs biological process
sequence-specific DNA binding Hs molecular function
positive regulation of erythrocyte differentiation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
protein dimerization activity Hs molecular function
RNA polymerase II transcription factor complex Hs cellular component

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 334 2.89e-107
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 495 1.15e-168
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 499 1.68e-169
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 334 2.89e-107
transcription factor activity, transcription factor binding Hs molecular function 499 1.68e-169
core promoter sequence-specific DNA binding Hs molecular function 334 2.89e-107
core promoter binding Hs molecular function 334 2.89e-107
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 495 1.15e-168
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 334 2.89e-107
DNA binding Hs molecular function 499 1.68e-169
transcription factor activity, sequence-specific DNA binding Hs molecular function 499 1.68e-169
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 499 1.68e-169
transcription coactivator activity Hs molecular function 499 1.68e-169
aryl hydrocarbon receptor activity Hs molecular function 499 1.68e-169
protein binding Hs molecular function 499 1.68e-169
nucleus Hs cellular component 499 1.68e-169
nucleoplasm Hs cellular component 499 1.68e-169
transcription factor complex Hs cellular component 499 1.68e-169
cytoplasm Hs cellular component 499 1.68e-169
transcription factor binding Hs molecular function 499 1.68e-169
nuclear body Hs cellular component 499 1.68e-169
PML body Hs cellular component 334 2.89e-107
aryl hydrocarbon receptor binding Hs molecular function 499 1.68e-169
chromatoid body Hs cellular component 334 2.89e-107
enhancer binding Hs molecular function 499 1.68e-169
intracellular membrane-bounded organelle Hs cellular component 334 2.89e-107
bHLH transcription factor binding Hs molecular function 334 2.89e-107
sequence-specific DNA binding Hs molecular function 499 1.68e-169
protein heterodimerization activity Hs molecular function 499 1.68e-169
protein dimerization activity Hs molecular function 499 1.68e-169
Hsp90 protein binding Hs molecular function 334 2.89e-107
repressing transcription factor binding Hs molecular function 334 2.89e-107
E-box binding Hs molecular function 334 2.89e-107
RNA polymerase II transcription factor complex Hs cellular component 499 1.68e-169

GO (InterProScan)

6 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PRINTS molecular function 1.3E-78
nucleus PRINTS cellular component 1.3E-78
transcription factor complex PRINTS cellular component 1.3E-78
cytoplasm PRINTS cellular component 1.3E-78
regulation of transcription, DNA-templated PRINTS biological process 1.3E-78
protein dimerization activity Gene3D molecular function 1.8E-22

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