Aniseed - Gene card

Gene 'KH2012:KH.C5.210' >
Gene 'KH2012:KH.C5.141'

Gene Card

Best human hits

PAPD4; ZCCHC11; ZCCHC6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007002

Gene Model ID

KH2012:KH.C5.141

Location

KhC5:3882336..3901891

Transcript Models and Sequences

KH2012:KH.C5.141.v1.A.SL1-1
KH2012:KH.C5.141.v2.A.SL1-1
KH2012:KH.C5.141.v3.A.SL1-1

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000008136
NCBI Reference Sequence	XM_002127571.3
NCBI Reference Sequence	XM_009860367.2
NCBI Reference Sequence	XM_018811931.1
NCBI Reference Sequence	XM_018811932.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cieg096j24

Plate: R1CiGC40h08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Znf_CCHC_sf	SUPERFAMILY	Zinc finger, CCHC-type superfamily
Znf_CCHC	SMART	Zinc finger, CCHC-type
Znf_CCHC	ProSiteProfiles	Zinc finger, CCHC-type
Znf_CCHC	Pfam	Zinc finger, CCHC-type
PAP_assoc	Pfam	PAP/25A-associated

GOSlim

27 results

GO Term	Annotation Origin	Type
nucleotide binding	Blast	molecular function
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Blast	molecular function
extracellular space	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
zinc ion binding	Orthology	molecular function
transferase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
nuclear-transcribed mRNA catabolic process	Orthology	biological process
RNA metabolic process	Orthology	biological process
RNA catabolic process	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
developmental process	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cellular process	Orthology	biological process
RNA processing	Orthology	biological process
regulation of molecular function	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nuclear part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
cytokine production	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
extracellular space	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
zinc ion binding	Hs	molecular function
miRNA metabolic process	Hs	biological process
miRNA catabolic process	Hs	biological process
transferase activity	Hs	molecular function
nucleotidyltransferase activity	Hs	molecular function
stem cell population maintenance	Hs	biological process
gene silencing by RNA	Hs	biological process
pre-miRNA processing	Hs	biological process
RNA 3'-end processing	Hs	biological process
negative regulation of NF-kappaB transcription factor activity	Hs	biological process
metal ion binding	Hs	molecular function
RNA uridylyltransferase activity	Hs	molecular function
extracellular exosome	Hs	cellular component

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	141	2.58e-35
nucleic acid binding	Hs	molecular function	528	7.74e-161
RNA binding	Hs	molecular function	528	7.74e-161
polynucleotide adenylyltransferase activity	Hs	molecular function	141	2.58e-35
protein binding	Hs	molecular function	528	7.74e-161
ATP binding	Hs	molecular function	141	2.58e-35
extracellular space	Hs	cellular component	528	7.74e-161
nucleus	Hs	cellular component	528	7.74e-161
nucleoplasm	Hs	cellular component	500	6.93e-152
nucleolus	Hs	cellular component	528	7.74e-161
cytoplasm	Hs	cellular component	528	7.74e-161
cytosol	Hs	cellular component	528	7.74e-161
zinc ion binding	Hs	molecular function	528	7.74e-161
transferase activity	Hs	molecular function	528	7.74e-161
nucleotidyltransferase activity	Hs	molecular function	528	7.74e-161
nuclear RNA-directed RNA polymerase complex	Hs	cellular component	141	2.58e-35
metal ion binding	Hs	molecular function	528	7.74e-161
RNA uridylyltransferase activity	Hs	molecular function	528	7.74e-161
extracellular exosome	Hs	cellular component	528	7.74e-161

GO (InterProScan)