Aniseed - Gene card

Gene Card

Best human hits

BMP2; BMP4; GDF5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006647

Gene Model ID

KH2012:KH.C4.547

Location

KhC4:1882017..1884355

Transcript Models and Sequences

KH2012:KH.C4.547.v1.A.nonSL1-1
KH2012:KH.C4.547.v1.A.nonSL3-1
KH2012:KH.C4.547.v1.A.nonSL4-1
KH2012:KH.C4.547.v1.A.nonSL5-1
KH2012:KH.C4.547.v1.A.nonSL6-1
KH2012:KH.C4.547.v1.A.nonSL7-1
KH2012:KH.C4.547.v1.R.nonSL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000013600
NCBI Reference Sequence	NM_001078540.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl015k02

Plate: R1CiGC10o17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

9 results

Ci-TGFbeta -969/71 REG00000649 [ regulatory_region (extended_promoter) ]
- Ci-TGFbeta -252/-75 REG00000311 [ regulatory_region (extended_promoter) ]

Cirobu.REG.KH2013:KH.C4.1879190-1882173 REG00001021 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2013:KH.C4.1881331-1882173 REG00001022 [ regulatory_region (extended_promoter) ]
  - Cirobu.REG.KH2013:KH.C4.1881531-1882173 REG00001023 [ regulatory_region (extended_promoter) ]
    - Cirobu.REG.KH2013:KH.C4.1881731-1882173 REG00001024 [ regulatory_region (extended_promoter) ]
      - Cirobu.REG.KH2013:KH.C4.1881926-1882173 REG00001025 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.KH2013:KH.C4.1882064-1882173 REG00001026 [ inactive_region ]

Cirobu.REG.KH2012.C4:1881883-1882061|Gdf1/3-r REG00001154 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
TGF-b_C	Pfam	Transforming growth factor-beta, C-terminal
TGF-b_C	SMART	Transforming growth factor-beta, C-terminal
Cystine-knot_cytokine	SUPERFAMILY	Cystine-knot cytokine
TGF-beta-rel	PANTHER	Transforming growth factor-beta-related
TGFb_CS	ProSitePatterns	Transforming growth factor beta, conserved site
Cystine-knot_cytokine	Gene3D	Cystine-knot cytokine
TGF-b_C	ProSiteProfiles	Transforming growth factor-beta, C-terminal

GOSlim

26 results

GO Term	Annotation Origin	Type
receptor binding	Blast	molecular function
protein binding	Blast	molecular function
extracellular region	Blast	cellular component
extracellular space	Blast	cellular component
intracellular	Blast	cellular component
endoplasmic reticulum lumen	Blast	cellular component
plasma membrane	Blast	cellular component
cell surface	Blast	cellular component
membrane	Blast	cellular component
identical protein binding	Blast	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
protein heterodimerization activity	Blast	molecular function
oxidation-reduction process	Blast	biological process
catalytic activity	Blast	molecular function
molecular function regulator	Blast	molecular function
regulation of signal transduction	Blast	biological process
signaling receptor activity	Blast	molecular function
anion binding	Blast	molecular function
carbohydrate derivative binding	Blast	molecular function
dephosphorylation	Blast	biological process
hydrolase activity	Blast	molecular function
enzyme binding	Blast	molecular function
enzyme activator activity	Blast	molecular function
chemotaxis	Blast	biological process
integral component of plasma membrane	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
retinol dehydrogenase activity	Hs	molecular function	150	1.24e-40
receptor binding	Hs	molecular function	150	1.24e-40
cytokine activity	Hs	molecular function	151	6.78e-41
transforming growth factor beta receptor binding	Hs	molecular function	151	6.78e-41
protein binding	Hs	molecular function	151	6.78e-41
extracellular region	Hs	cellular component	151	6.78e-41
proteinaceous extracellular matrix	Hs	cellular component	151	6.78e-41
extracellular space	Hs	cellular component	151	6.78e-41
intracellular	Hs	cellular component	145	2.59e-38
endoplasmic reticulum lumen	Hs	cellular component	151	6.78e-41
plasma membrane	Hs	cellular component	145	2.59e-38
growth factor activity	Hs	molecular function	151	6.78e-41
heparin binding	Hs	molecular function	151	6.78e-41
cell surface	Hs	cellular component	150	1.24e-40
membrane	Hs	cellular component	145	2.59e-38
phosphatase activator activity	Hs	molecular function	150	1.24e-40
BMP binding	Hs	molecular function	145	2.59e-38
co-receptor binding	Hs	molecular function	151	6.78e-41
chemoattractant activity	Hs	molecular function	151	6.78e-41
identical protein binding	Hs	molecular function	145	2.59e-38
intracellular membrane-bounded organelle	Hs	cellular component	150	1.24e-40
SMAD binding	Hs	molecular function	150	1.24e-40
protein heterodimerization activity	Hs	molecular function	150	1.24e-40
BMP receptor binding	Hs	molecular function	151	6.78e-41
BMP receptor complex	Hs	cellular component	150	1.24e-40

GO (InterProScan)