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  3. Gene 'KH2012:KH.S390.2' > 

Gene Card

Best human hits

AL359736.1; ARHGEF9; SPATA13

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006526

Gene Model ID

KH2012:KH.C4.435

Location

KhC4:853259..868885

Transcript Models and Sequences

  KH2012:KH.C4.435.v1.A.SL2-1
KH2012:KH.C4.435.v2.A.nonSL11-1
KH2012:KH.C4.435.v2.A.nonSL5-1
KH2012:KH.C4.435.v2.A.nonSL8-1
KH2012:KH.C4.435.v2.A.SL1-1
KH2012:KH.C4.435.v2.A.SL3-1
KH2012:KH.C4.435.v3.A.nonSL6-1
KH2012:KH.C4.435.v3.A.SL10-1
KH2012:KH.C4.435.v3.A.SL12-1
KH2012:KH.C4.435.v3.A.SL4-1
KH2012:KH.C4.435.v3.A.SL7-1
KH2012:KH.C4.435.v3.A.SL9-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000024938
NCBI Reference Sequence XM_002121597.3
Collections

Gateway full ORF

2 results

cien94511

Plate: VES85_D05

cien172441

Plate: VES96_I23

Gene collection 1 (N. Satoh)

2 results

cieg007g02

Plate: R1CiGC16f23

ciad013e05

Plate: R1CiGC02i06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
PH_domain ProSiteProfiles Pleckstrin homology domain
DH-domain CDD Dbl homology (DH) domain
DH-domain ProSiteProfiles Dbl homology (DH) domain
PH_domain SMART Pleckstrin homology domain
DBL_dom_sf Gene3D Dbl homology (DH) domain superfamily
SH3-like_dom_sf SUPERFAMILY SH3-like domain superfamily
PH-like_dom_sf Gene3D PH-like domain superfamily
SH3_domain Pfam SH3 domain
SH3_domain SMART SH3 domain
GDS_CDC24_CS ProSitePatterns Guanine-nucleotide dissociation stimulator, CDC24, conserved site
DBL_dom_sf SUPERFAMILY Dbl homology (DH) domain superfamily
DH-domain Pfam Dbl homology (DH) domain
DH-domain SMART Dbl homology (DH) domain
SH3_domain ProSiteProfiles SH3 domain

GOSlim

23 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
G-protein coupled receptor signaling pathway Orthology biological process
membrane Orthology cellular component
cell migration Orthology biological process
lamellipodium Orthology cellular component
cell projection Orthology cellular component
positive regulation of apoptotic process Orthology biological process
regulation of molecular function Orthology biological process
intracellular signal transduction Orthology biological process
intracellular Orthology cellular component
enzyme binding Orthology molecular function
molecular function regulator Orthology molecular function
cell projection assembly Orthology biological process
plasma membrane region Orthology cellular component
cytoskeletal part Orthology cellular component
cell projection membrane Orthology cellular component
cell leading edge Orthology cellular component
small GTPase mediated signal transduction Orthology biological process
regulation of signal transduction Orthology biological process

GO (Orthology)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
guanyl-nucleotide exchange factor activity Hs molecular function
Rho guanyl-nucleotide exchange factor activity Hs molecular function
protein binding Hs molecular function
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
G-protein coupled receptor signaling pathway Hs biological process
membrane Hs cellular component
cell migration Hs biological process
lamellipodium Hs cellular component
lamellipodium assembly Hs biological process
filopodium Hs cellular component
regulation of cell migration Hs biological process
Rac guanyl-nucleotide exchange factor activity Hs molecular function
ruffle membrane Hs cellular component
regulation of Rho protein signal transduction Hs biological process
cell projection Hs cellular component
positive regulation of apoptotic process Hs biological process
filopodium assembly Hs biological process
regulation of small GTPase mediated signal transduction Hs biological process
regulation of molecular function Hs biological process
intracellular signal transduction Hs biological process
intracellular Hs cellular component
protein domain specific binding Hs molecular function

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
guanyl-nucleotide exchange factor activity Hs molecular function 435 2.26e-135
Rho guanyl-nucleotide exchange factor activity Hs molecular function 435 2.26e-135
protein binding Hs molecular function 435 2.26e-135
nucleoplasm Hs cellular component 395 3.86e-114
cytoplasm Hs cellular component 435 2.26e-135
cytosol Hs cellular component 435 2.26e-135
plasma membrane Hs cellular component 395 3.86e-114
membrane Hs cellular component 395 3.86e-114
lamellipodium Hs cellular component 395 3.86e-114
filopodium Hs cellular component 395 3.86e-114
Rac guanyl-nucleotide exchange factor activity Hs molecular function 395 3.86e-114
ruffle membrane Hs cellular component 395 3.86e-114
cell projection Hs cellular component 395 3.86e-114

GO (InterProScan)

5 results

GO Term Analysis Type e-value
guanyl-nucleotide exchange factor activity ProSitePatterns molecular function
Rho guanyl-nucleotide exchange factor activity SMART molecular function 2.0E-61
protein binding SUPERFAMILY molecular function 1.22E-20
regulation of Rho protein signal transduction SMART biological process 2.0E-61
intracellular signal transduction ProSitePatterns biological process

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