The Genome Browser is currently unreachable. Sorry for the inconvenience. Please try again soon.
Login
Help

Submit your Data

  1. Gene 'KH2012:KH.C4.341'

Gene Card

Best human hits

FOXA2; FOXB1; FOXB2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006425

Gene Model ID

KH2012:KH.C4.341

Location

KhC4:4655470..4657075

Transcript Models and Sequences

  KH2012:KH.C4.341.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008834
NCBI Reference Sequence NM_001032523.1
Collections

Gateway full ORF

2 results

cien48177

Plate: VES77_J20

cien187931

Plate: VES99_L08

Gene collection 1 (N. Satoh)

1 result

cilv039e20

Plate: R1CiGC28o19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

2 results

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Fork_head_dom CDD Fork head domain
TF_fork_head_CS_1 ProSitePatterns Fork head domain conserved site1
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
Fork_head_dom ProSiteProfiles Fork head domain
Fork_head_dom PRINTS Fork head domain
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2
Fork_head_dom Pfam Fork head domain
Fork_head_dom SMART Fork head domain

GOSlim

29 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
transcription factor binding Blast molecular function
anatomical structure morphogenesis Orthology biological process
cell junction Blast cellular component
cell differentiation Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Blast molecular function
system development Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
axonogenesis Orthology biological process
cell communication Orthology biological process
nervous system process Orthology biological process
animal organ development Orthology biological process
central nervous system development Orthology biological process
brain development Orthology biological process
cell migration Orthology biological process
nervous system development Orthology biological process
negative regulation of apoptotic process Orthology biological process

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
urogenital system development Hs biological process
somitogenesis Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
axon target recognition Hs biological process
visual learning Hs biological process
anatomical structure morphogenesis Hs biological process
spinal cord development Hs biological process
thalamus development Hs biological process
hypothalamus cell migration Hs biological process
telencephalon cell migration Hs biological process
cell differentiation Hs biological process
midbrain development Hs biological process
floor plate development Hs biological process
negative regulation of neuron apoptotic process Hs biological process
sequence-specific DNA binding Hs molecular function
inferior colliculus development Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 176 7.85e-50
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 217 8.18e-67
DNA binding Hs molecular function 217 8.18e-67
transcription factor activity, sequence-specific DNA binding Hs molecular function 217 8.18e-67
protein binding Hs molecular function 217 8.18e-67
nucleus Hs cellular component 217 8.18e-67
nucleoplasm Hs cellular component 176 7.85e-50
cytoplasm Hs cellular component 176 7.85e-50
transcription factor binding Hs molecular function 176 7.85e-50
protein domain specific binding Hs molecular function 176 7.85e-50
cell junction Hs cellular component 176 7.85e-50
sequence-specific DNA binding Hs molecular function 217 8.18e-67
transcription regulatory region DNA binding Hs molecular function 176 7.85e-50

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 7.9E-59
regulation of transcription, DNA-templated SMART biological process 7.9E-59
sequence-specific DNA binding SMART molecular function 7.9E-59

Back to Top





By clicking "SEND", you accept the terms of our Privacy Policy.

You may choose to prevent this website from aggregating and analyzing the actions you take here. Doing so will protect your privacy, but will also prevent the owner from learning from your actions and creating a better experience for you and other users.