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GENE CARD

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Gene Card

Best human hits

TBL1X; TBL1XR1; TBL1Y

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006397

Gene Model ID

KH2012:KH.C4.316

Location

KhC4:4008695..4018976

Transcript Models and Sequences

  KH2012:KH.C4.316.v1.R.ND2-1
KH2012:KH.C4.316.v2.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000008885
NCBI Reference Sequence XM_002128924.3
NCBI Reference Sequence XM_018811760.1
Collections

Gateway full ORF

2 results

cima8109449

Plate: VES73_M18

cima8113915

Plate: VES74_A08

Gene collection 1 (N. Satoh)

1 result

cieg028i13

Plate: R1CiGC20k19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
WD40_repeat ProSiteProfiles WD40 repeat
WD40_repeat_dom ProSiteProfiles WD40-repeat-containing domain
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily
WD40_repeat Pfam WD40 repeat
WD40_repeat_CS ProSitePatterns WD40 repeat, conserved site
WD40/YVTN_repeat-like_dom_sf Gene3D WD40/YVTN repeat-like-containing domain superfamily
G-protein_beta_WD-40_rep PRINTS G-protein beta WD-40 repeat
WD40_repeat SMART WD40 repeat
LisH SMART LIS1 homology motif
LisH ProSiteProfiles LIS1 homology motif
LisH Pfam LIS1 homology motif

GOSlim

30 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
DNA binding Orthology molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
proteolysis Orthology biological process
sensory perception of sound Orthology biological process
protein C-terminus binding Orthology molecular function
transcription factor binding Orthology molecular function
regulation of gene expression Orthology biological process
transcription regulatory region DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein N-terminus binding Orthology molecular function
positive regulation of canonical Wnt signaling pathway Orthology biological process
negative regulation of nucleic acid-templated transcription Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
microtubule Orthology cellular component
organelle organization Orthology biological process
cellular protein modification process Orthology biological process
organic substance metabolic process Orthology biological process
developmental process Orthology biological process
animal organ development Orthology biological process
regulation of cellular metabolic process Orthology biological process

GO (Orthology)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
histone deacetylase complex Hs cellular component
negative regulation of transcription from RNA polymerase II promoter Hs biological process
response to dietary excess Hs biological process
DNA binding Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spindle microtubule Hs cellular component
chromatin organization Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
proteolysis Hs biological process
sensory perception of sound Hs biological process
beta-catenin binding Hs molecular function
protein C-terminus binding Hs molecular function
transcription factor binding Hs molecular function
regulation of gene expression Hs biological process
lipid catabolic process Hs biological process
histone deacetylation Hs biological process
transcriptional repressor complex Hs cellular component
regulation of lipid metabolic process Hs biological process
protein domain specific binding Hs molecular function
multicellular organism growth Hs biological process
histone binding Hs molecular function
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
transcription regulatory region DNA binding Hs molecular function
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein N-terminus binding Hs molecular function
adipose tissue development Hs biological process
regulation of triglyceride metabolic process Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
negative regulation of nucleic acid-templated transcription Hs biological process

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone deacetylase complex Hs cellular component 781 0.0
DNA binding Hs molecular function 723 0.0
transcription corepressor activity Hs molecular function 781 0.0
protein binding Hs molecular function 781 0.0
nucleus Hs cellular component 781 0.0
nucleoplasm Hs cellular component 781 0.0
spindle microtubule Hs cellular component 781 0.0
beta-catenin binding Hs molecular function 781 0.0
protein C-terminus binding Hs molecular function 781 0.0
transcription factor binding Hs molecular function 781 0.0
transcriptional repressor complex Hs cellular component 781 0.0
protein domain specific binding Hs molecular function 781 0.0
histone binding Hs molecular function 781 0.0
transcription regulatory region DNA binding Hs molecular function 781 0.0
protein N-terminus binding Hs molecular function 723 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Gene3D molecular function 1.7E-160

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