Aniseed - Gene card

Gene Card

Best human hits

TRMT12; TRMT5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006260

Gene Model ID

KH2012:KH.C4.19

Location

KhC4:2606073..2611305

Transcript Models and Sequences

KH2012:KH.C4.19.v1.A.nonSL2-1
KH2012:KH.C4.19.v1.A.nonSL5-1
KH2012:KH.C4.19.v1.A.SL1-1
KH2012:KH.C4.19.v1.A.SL4-1
KH2012:KH.C4.19.v2.A.SL3-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000018970
NCBI Reference Sequence	XM_002124467.3
NCBI Reference Sequence	XM_018811678.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cits040i23

Plate: R1CiGC35i07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
MeTrfase_TRM5/TYW2	ProSiteProfiles	SAM-dependent methyltransferase TRM5/TYW2-type
tRNA_Gua_MeTrfase_euk	Hamap	tRNA (guanine(37)-N(1))-methyltransferase, eukaryotic
MeTrfase_TRM5/TYW2	Pfam	SAM-dependent methyltransferase TRM5/TYW2-type
SAM-dependent_MTases	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferase

GOSlim

8 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
transferase activity	Orthology	molecular function
RNA processing	Orthology	biological process
metabolic process	Orthology	biological process

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
tRNA processing	Hs	biological process
methyltransferase activity	Hs	molecular function
tRNA (guanine-N1-)-methyltransferase activity	Hs	molecular function
transferase activity	Hs	molecular function
tRNA methylation	Hs	biological process
methylation	Hs	biological process
tRNA (guanine(37)-N(1))-methyltransferase activity	Hs	molecular function
mitochondrial tRNA methylation	Hs	biological process

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	46.2	2.83e-05
nucleus	Hs	cellular component	340	1.41e-112
cytoplasm	Hs	cellular component	340	1.41e-112
mitochondrion	Hs	cellular component	340	1.41e-112
mitochondrial matrix	Hs	cellular component	340	1.41e-112
methyltransferase activity	Hs	molecular function	340	1.41e-112
tRNA (guanine-N1-)-methyltransferase activity	Hs	molecular function	340	1.41e-112
transferase activity	Hs	molecular function	340	1.41e-112
tRNA (guanine(37)-N(1))-methyltransferase activity	Hs	molecular function	340	1.41e-112
tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity	Hs	molecular function	46.2	2.83e-05

GO (InterProScan)