Aniseed - Gene card

Gene Card

Best human hits

RPS27A; UBA52; UBB

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006259

Gene Model ID

KH2012:KH.C4.189

Location

KhC4:3573424..3575381

Transcript Models and Sequences

KH2012:KH.C4.189.v1.A.SL2-1
KH2012:KH.C4.189.v1.A.SL5-1
KH2012:KH.C4.189.v2.A.nonSL1-1
KH2012:KH.C4.189.v2.A.nonSL3-1
KH2012:KH.C4.189.v2.A.nonSL4-1
KH2012:KH.C4.189.v2.A.nonSL6-1
KH2012:KH.C4.189.v2.A.nonSL7-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000005008
NCBI Reference Sequence	XM_002130144.4
NCBI Reference Sequence	XM_004225927.3
NCBI Reference Sequence	XM_018811596.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad005k04

Plate: R1CiGC01b23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Ubiquitin_dom	ProSiteProfiles	Ubiquitin domain
Ribosomal_L40e	SMART	Ribosomal protein L40e
Ubiquitin-like_domsf	SUPERFAMILY	Ubiquitin-like domain superfamily
Ubiquitin_dom	SMART	Ubiquitin domain
Ribosomal_L40e	Pfam	Ribosomal protein L40e
Ubiquitin	PRINTS	Ubiquitin
Ubiquitin_CS	ProSitePatterns	Ubiquitin conserved site
Ubiquitin_dom	Pfam	Ubiquitin domain
L40e_sf	Gene3D	Ribosomal protein L40e superfamily
Ribosomal_zn-bd	SUPERFAMILY	Zinc-binding ribosomal protein

GOSlim

77 results

GO Term	Annotation Origin	Type
G2/M transition of mitotic cell cycle	Orthology	biological process
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
protein polyubiquitination	Orthology	biological process
RNA binding	Blast	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular space	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
lysosomal membrane	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
plasma membrane	Orthology	cellular component
translational initiation	Orthology	biological process
protein folding	Orthology	biological process
cellular protein modification process	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
Notch signaling pathway	Orthology	biological process
membrane	Blast	cellular component
protein ubiquitination	Orthology	biological process
cytokine-mediated signaling pathway	Orthology	biological process
vesicle	Orthology	cellular component
neuron projection	Blast	cellular component
neuronal cell body	Blast	cellular component
positive regulation of apoptotic process	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
myelin sheath	Blast	cellular component
innate immune response	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Blast	molecular function
transmembrane transport	Orthology	biological process
membrane organization	Orthology	biological process
extracellular exosome	Orthology	cellular component
negative regulation of canonical Wnt signaling pathway	Orthology	biological process
positive regulation of canonical Wnt signaling pathway	Orthology	biological process
intracellular signal transduction	Orthology	biological process
protein phosphorylation	Orthology	biological process
positive regulation of catalytic activity	Orthology	biological process
protein serine/threonine kinase activity	Orthology	molecular function
positive regulation of signal transduction	Orthology	biological process
organelle organization	Orthology	biological process
DNA repair	Orthology	biological process
signal transduction	Orthology	biological process
whole membrane	Orthology	cellular component
mitochondrial membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
oxidation-reduction process	Orthology	biological process
RNA processing	Orthology	biological process
cellular process	Orthology	biological process
cell	Orthology	cellular component
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
cellular response to stress	Orthology	biological process
intracellular organelle part	Orthology	cellular component
endosome	Orthology	cellular component
cell-cell signaling	Orthology	biological process
intracellular transport	Orthology	biological process
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
negative regulation of signal transduction	Orthology	biological process
cytoplasmic vesicle	Orthology	cellular component
proteolysis	Orthology	biological process
ion transport	Orthology	biological process
immune response	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
mRNA catabolic process	Orthology	biological process
endoplasmic reticulum part	Orthology	cellular component
anatomical structure morphogenesis	Orthology	biological process
animal organ development	Orthology	biological process
immune system process	Orthology	biological process
cell differentiation	Orthology	biological process

GO (Orthology)

87 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
G2/M transition of mitotic cell cycle	Hs	biological process
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
MAPK cascade	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
activation of MAPK activity	Hs	biological process
protein polyubiquitination	Hs	biological process
nucleotide-excision repair, DNA damage recognition	Hs	biological process
MyD88-dependent toll-like receptor signaling pathway	Hs	biological process
MyD88-independent toll-like receptor signaling pathway	Hs	biological process
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
extracellular space	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrial outer membrane	Hs	cellular component
lysosomal membrane	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
plasma membrane	Hs	cellular component
glycogen biosynthetic process	Hs	biological process
transcription-coupled nucleotide-excision repair	Hs	biological process
nucleotide-excision repair, DNA incision, 5'-to lesion	Hs	biological process
nucleotide-excision repair, DNA gap filling	Hs	biological process
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
protein folding	Hs	biological process
cellular protein modification process	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
cellular iron ion homeostasis	Hs	biological process
transforming growth factor beta receptor signaling pathway	Hs	biological process
Notch signaling pathway	Hs	biological process
I-kappaB kinase/NF-kappaB signaling	Hs	biological process
JNK cascade	Hs	biological process
fibroblast growth factor receptor signaling pathway	Hs	biological process
endosome membrane	Hs	cellular component
negative regulation of G2/M transition of mitotic cell cycle	Hs	biological process
Wnt signaling pathway	Hs	biological process
endosomal transport	Hs	biological process
macroautophagy	Hs	biological process
protein ubiquitination	Hs	biological process
protein deubiquitination	Hs	biological process
cytokine-mediated signaling pathway	Hs	biological process
translesion synthesis	Hs	biological process
negative regulation of transforming growth factor beta receptor signaling pathway	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
endocytic vesicle membrane	Hs	cellular component
anaphase-promoting complex-dependent catabolic process	Hs	biological process
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Hs	biological process
vesicle	Hs	cellular component
negative regulation of type I interferon production	Hs	biological process
tumor necrosis factor-mediated signaling pathway	Hs	biological process
nucleotide-excision repair, DNA incision	Hs	biological process
ion transmembrane transport	Hs	biological process
TRIF-dependent toll-like receptor signaling pathway	Hs	biological process
interstrand cross-link repair	Hs	biological process
NIK/NF-kappaB signaling	Hs	biological process
Fc-epsilon receptor signaling pathway	Hs	biological process
negative regulation of epidermal growth factor receptor signaling pathway	Hs	biological process
error-prone translesion synthesis	Hs	biological process
DNA damage response, detection of DNA damage	Hs	biological process
positive regulation of apoptotic process	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
positive regulation of I-kappaB kinase/NF-kappaB signaling	Hs	biological process
proteasome-mediated ubiquitin-dependent protein catabolic process	Hs	biological process
regulation of mRNA stability	Hs	biological process
host cell	Hs	cellular component
endoplasmic reticulum quality control compartment	Hs	cellular component
innate immune response	Hs	biological process
positive regulation of epidermal growth factor receptor signaling pathway	Hs	biological process
negative regulation of Notch signaling pathway	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
T cell receptor signaling pathway	Hs	biological process
positive regulation of NF-kappaB transcription factor activity	Hs	biological process
stress-activated MAPK cascade	Hs	biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	Hs	biological process
transmembrane transport	Hs	biological process
Wnt signaling pathway, planar cell polarity pathway	Hs	biological process
membrane organization	Hs	biological process
extracellular exosome	Hs	cellular component
interleukin-1-mediated signaling pathway	Hs	biological process
negative regulation of canonical Wnt signaling pathway	Hs	biological process
positive regulation of canonical Wnt signaling pathway	Hs	biological process
regulation of hematopoietic stem cell differentiation	Hs	biological process

GO (Blast)

30 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	145	5.43e-46
structural constituent of ribosome	Hs	molecular function	193	6.37e-65
protein binding	Hs	molecular function	193	6.37e-65
extracellular space	Hs	cellular component	193	6.37e-65
nucleus	Hs	cellular component	193	6.37e-65
nucleoplasm	Hs	cellular component	193	6.37e-65
nucleolus	Hs	cellular component	145	5.43e-46
cytoplasm	Hs	cellular component	193	6.37e-65
mitochondrion	Hs	cellular component	147	1.19e-45
mitochondrial outer membrane	Hs	cellular component	193	6.37e-65
lysosomal membrane	Hs	cellular component	193	6.37e-65
endoplasmic reticulum	Hs	cellular component	193	6.37e-65
endoplasmic reticulum membrane	Hs	cellular component	193	6.37e-65
cytosol	Hs	cellular component	193	6.37e-65
ribosome	Hs	cellular component	193	6.37e-65
plasma membrane	Hs	cellular component	193	6.37e-65
endosome membrane	Hs	cellular component	193	6.37e-65
small ribosomal subunit	Hs	cellular component	145	5.43e-46
membrane	Hs	cellular component	145	5.43e-46
cytosolic small ribosomal subunit	Hs	cellular component	145	5.43e-46
intracellular ribonucleoprotein complex	Hs	cellular component	193	6.37e-65
endocytic vesicle membrane	Hs	cellular component	193	6.37e-65
vesicle	Hs	cellular component	193	6.37e-65
neuron projection	Hs	cellular component	147	1.19e-45
neuronal cell body	Hs	cellular component	147	1.19e-45
myelin sheath	Hs	cellular component	145	5.43e-46
host cell	Hs	cellular component	193	6.37e-65
endoplasmic reticulum quality control compartment	Hs	cellular component	193	6.37e-65
metal ion binding	Hs	molecular function	145	5.43e-46
extracellular exosome	Hs	cellular component	193	6.37e-65

GO (InterProScan)