Aniseed - Gene card

Gene 'Moocul.CG.ELv1_2.S66...' >
Gene 'KH2012:KH.C4.133'

Gene Card

Best human hits

GAPVD1; RABGEF1; RIN3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006200

Gene Model ID

KH2012:KH.C4.133

Location

KhC4:4489738..4496635

Transcript Models and Sequences

KH2012:KH.C4.133.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002130747.4

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

cieg003n21

Plate: R1CiGC15n14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
VPS9_dom_sf	Gene3D	VPS9 domain superfamily
VPS9	Pfam	VPS9 domain
VPS9	SMART	VPS9 domain
Znf_A20	SMART	Zinc finger, A20-type
Znf_A20	ProSiteProfiles	Zinc finger, A20-type
VPS9	ProSiteProfiles	VPS9 domain
VPS9_dom_sf	SUPERFAMILY	VPS9 domain superfamily
Znf_A20	Pfam	Zinc finger, A20-type

GOSlim

18 results

GO Term	Annotation Origin	Type
DNA binding	Blast	molecular function
GTPase activator activity	Blast	molecular function
protein binding	Blast	molecular function
nucleolus	Blast	cellular component
cytoplasm	Blast	cellular component
endosome	Blast	cellular component
early endosome	Blast	cellular component
cytosol	Blast	cellular component
zinc ion binding	Blast	molecular function
membrane	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
metal ion binding	Blast	molecular function
enzyme binding	Blast	molecular function
molecular function regulator	Blast	molecular function
whole membrane	Blast	cellular component
intracellular organelle part	Blast	cellular component
bounding membrane of organelle	Blast	cellular component
cell adhesion molecule binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	392	6.06e-131
guanyl-nucleotide exchange factor activity	Hs	molecular function	92.0	2.90e-19
GTPase activator activity	Hs	molecular function	92.0	2.90e-19
protein binding	Hs	molecular function	392	6.06e-131
nucleolus	Hs	cellular component	392	6.06e-131
cytoplasm	Hs	cellular component	392	6.06e-131
endosome	Hs	cellular component	392	6.06e-131
early endosome	Hs	cellular component	392	6.06e-131
cytosol	Hs	cellular component	392	6.06e-131
zinc ion binding	Hs	molecular function	392	6.06e-131
membrane	Hs	cellular component	92.0	2.90e-19
Rab guanyl-nucleotide exchange factor activity	Hs	molecular function	392	6.06e-131
Rab GTPase binding	Hs	molecular function	392	6.06e-131
cytoplasmic vesicle	Hs	cellular component	49.7	3.81e-06
early endosome membrane	Hs	cellular component	392	6.06e-131
GTPase activating protein binding	Hs	molecular function	92.0	2.90e-19
cadherin binding	Hs	molecular function	92.0	2.90e-19
metal ion binding	Hs	molecular function	392	6.06e-131
recycling endosome	Hs	cellular component	392	6.06e-131

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
DNA binding	Pfam	molecular function	2.9E-12
zinc ion binding	Pfam	molecular function	2.9E-12